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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3
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4 <package name="R" version="3.0.3">
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5 <repository name="package_r_3_0_3" toolshed="http://toolshed.g2.bx.psu.edu" owner="iuc" changeset_revision="f386d7431fe0" />
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6 <readme>Let's see where this msg appears...R</readme>
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7 </package>
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8
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9 <package name="samtools" version="0.1.18">
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10 <repository name="package_samtools_0_1_18" toolshed="http://toolshed.g2.bx.psu.edu" owner="devteam" changeset_revision="171cd8bc208d"/>
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11 <readme>Let's see where this msg appears...samtools</readme>
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12 </package>
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13
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14 <package name="snpeff" version="3.4">
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15 <repository name="package_snpeff_3_4" toolshed="http://toolshed.g2.bx.psu.edu" owner="iuc" changeset_revision="af7ff8187d09"/>
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16 <readme>Let's see where this msg appears...snpeff</readme>
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17 </package>
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18
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19 <package name="varscan" version="2">
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20 <repository name="varscan_version_2" toolshed="http://toolshed.g2.bx.psu.edu" owner="devteam" changeset_revision="6f8cead3dc93"/>
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21 <readme>Let's see where this msg appears...varscan</readme>
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22 </package>
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23
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24 <!-- TXT -->
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25 <set_environment version="1.0">
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26 <environment_variable action="set_to" name="TOOL_DIR">$REPOSITORY_INSTALL_DIR</environment_variable>
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27 <readme>Let's see where this msg appears...ENV VAR</readme>
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28 </set_environment>
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29
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30 </tool_dependency>
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