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1 #This is a sample file distributed with Galaxy that enables tools
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2 #to use a directory with indexed fasta files. The all_fasta.loc file has
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3 #this format (longer white space characters are TAB characters):
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4 #
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5 #<unique_build_id> <dbkey> <display_name> <file_path>
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6 #
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7 #So, for example, if you had phiX indexed stored in
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8 #/example/path/
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9 #then the all_fasta.loc entry would look like this:
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10 #
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11 #phiX174 phiX phiX Pretty /example/path/phiX.fa
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12 #
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13 #and your /example/path/ directory
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14 #would contain phiX.fa.* files:
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15 #
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16 # phiX.fa.fai
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17 # phiX.fa.dict
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18 #
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19 #Your all_fasta.loc file should include an entry per line for each
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20 #index set you have stored. For example:
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21 #
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22 #phiX174 phiX phiX174 /path/to/phiX.fa
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23 #hg18 hg18 hg18 Full /path/to/hg18full.fa
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24 #hg19 hg19 hg19 /path/to/hg19.fa
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25 #...etc...
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26 #
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