Mercurial > repos > slegras > wigmaker
annotate wigmaker.sh @ 0:963fc31e3269 draft default tip
Uploaded
| author | slegras |
|---|---|
| date | Fri, 09 Oct 2015 09:17:29 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| 0 | 1 #! /bin/bash |
| 2 | |
| 3 input=$1 | |
| 4 output=$2 | |
| 5 wigmaker=$3 | |
| 6 | |
| 7 inputfile=`basename $input` | |
| 8 dir=`dirname $input` | |
| 9 | |
| 10 cd $dir | |
| 11 rm $dir/wigs_for_*.wig.gz > /dev/null 2>&1 | |
| 12 rm $dir/wigs_for_*.wig > /dev/null 2>&1 | |
| 13 | |
| 14 prefix=`echo $input | perl -ne '(\$prefix) = \$_ =~ /(dataset_[0-9]+)/; print \$prefix'` | |
| 15 | |
| 16 java -Djava.io.tmpdir=/tmp -Xmx2G -jar $wigmaker $inputfile | |
| 17 | |
| 18 cp $dir/wigs_for_$prefix.wig $output | |
| 19 rm $dir/wigs_for_$prefix.wig | |
| 20 rm $dir/wigs_for_$prefix.wig.gz | |
| 21 |