diff wigmaker.sh @ 0:963fc31e3269 draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/wigmaker.sh	Fri Oct 09 09:17:29 2015 -0400
@@ -0,0 +1,21 @@
+#! /bin/bash
+
+input=$1
+output=$2
+wigmaker=$3
+
+inputfile=`basename $input`
+dir=`dirname $input`
+
+cd $dir
+rm $dir/wigs_for_*.wig.gz > /dev/null 2>&1
+rm $dir/wigs_for_*.wig > /dev/null 2>&1
+
+prefix=`echo $input | perl -ne '(\$prefix) = \$_ =~ /(dataset_[0-9]+)/; print \$prefix'`
+
+java -Djava.io.tmpdir=/tmp -Xmx2G -jar $wigmaker $inputfile
+
+cp $dir/wigs_for_$prefix.wig $output
+rm $dir/wigs_for_$prefix.wig
+rm $dir/wigs_for_$prefix.wig.gz
+