|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="bcftools" version="0.1.17">
|
|
|
4 <install version="1.0">
|
|
|
5 <actions>
|
|
|
6 <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2/download</action>
|
|
|
7 <action type="shell_command">make</action>
|
|
|
8 <action type="make_directory">$INSTALL_DIR/bin</action>
|
|
|
9 <action type="move_file">
|
|
|
10 <source>bcftools/bcftools</source>
|
|
|
11 <destination>$INSTALL_DIR/bin</destination>
|
|
|
12 </action>
|
|
|
13 <action type="set_environment">
|
|
|
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
|
|
|
15 </action>
|
|
|
16 </actions>
|
|
|
17
|
|
|
18 </install>
|
|
|
19 <readme>
|
|
|
20
|
|
|
21 Program: bcftools (Tools for data in the VCF/BCF formats)
|
|
|
22 Version: 0.1.17-dev (r973:277)
|
|
|
23
|
|
|
24 Usage: bcftools <command> <arguments>
|
|
|
25
|
|
|
26 Command: view print, extract, convert and call SNPs from BCF
|
|
|
27 index index BCF
|
|
|
28 cat concatenate BCFs
|
|
|
29 ld compute all-pair r^2
|
|
|
30 ldpair compute r^2 between requested pairs
|
|
|
31
|
|
|
32 </readme>
|
|
|
33 </package>
|
|
|
34 </tool_dependency> |
