Mercurial > repos > simon-gladman > vennt

changeset 1:ccc9d83d4c56 draft

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Uploaded
author simon-gladman
date Mon, 24 Feb 2014 21:45:17 -0500
parents b001248f393a
children 4abd1c73c6a1
files vennt.xml
diffstat 1 files changed, 42 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/vennt.xml	Mon Feb 24 21:45:17 2014 -0500
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+<tool id="vennt" name="Vennt" version="1.0.0">
+    <description>RNA Seq analysis and visualisation.</description>
+    <command interpreter="python">
+        vennt.py
+        --tab
+        $cuffdiff
+        $dataset
+        > 
+        $output
+    </command>
+    <inputs>
+        <param name="dataset" type="data" format="tabular" label="Cuffdiff gene/transcript expression testing output" help="Cuffdiff output to visualise."/>
+        <param name="cuffdiff" type="boolean" truevalue="--cuffdiff" falsevalue="" checked="false" label="Cuffdiff output" help="Is this cuffdiff output?"/>
+    </inputs>
+    <outputs>
+        <data name="output" format="html" label="${tool.name} on ${on_string}: html"/>
+    </outputs>
+    
+    <help>
+**Vennt**
+
+Dynamic Venn diagrams for exploring lists of differential expressed genes.
+
+Written by David Powell - Victorian Bioinformatics Consortium 2012 - 2014
+
+Wrapped by Simon Gladman - Victorian Bioinformatics Consortium 2014
+
+0.8.1
+------
+
+Outputs in html format.
+    
+------
+
+Inputs:
+
+Gene differential expression dataset
+
+------
+
+    </help>
+</tool>