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1
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1 <tool id="vennt" name="Vennt" version="1.0.0">
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2 <description>RNA Seq analysis and visualisation.</description>
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3 <command interpreter="python">
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4 vennt.py
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3
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5 $tab
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1
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6 $cuffdiff
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7 $dataset
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8 >
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9 $output
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10 </command>
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11 <inputs>
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12 <param name="dataset" type="data" format="tabular" label="Cuffdiff gene/transcript expression testing output" help="Cuffdiff output to visualise."/>
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13 <param name="cuffdiff" type="boolean" truevalue="--cuffdiff" falsevalue="" checked="false" label="Cuffdiff data" help="Is this cuffdiff output data?"/>
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14 <param name="tab" type="boolean" truevalue="--tab" falsevalue="" checked="false" label="Tab delimited data?" help="Is this tab delimited data? (Instead of csv)"/>
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1
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15 </inputs>
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16 <outputs>
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17 <data name="output" format="html" label="${tool.name} on ${on_string}: html"/>
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18 </outputs>
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4
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19 <stdio>
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20 <exit_code range="1" level="fatal" description="Vennt python error. See stderr output." />
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21 </stdio>
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1
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22
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23 <help>
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24 **Vennt**
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25
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26 Dynamic Venn diagrams for exploring lists of differential expressed genes.
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27
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28 Written by David Powell - Victorian Bioinformatics Consortium 2012 - 2014
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29
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30 Wrapped by Simon Gladman - Victorian Bioinformatics Consortium 2014
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31
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32 0.8.1
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33 ------
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34
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35 Outputs in html format.
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36
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37 ------
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38
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39 Inputs:
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40
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41 Gene differential expression dataset
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42
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43 ------
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44
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45 </help>
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46 </tool>
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