Mercurial > repos > simon-gladman > velvet_optimiser_2_2_5

changeset 7:a5bf1e77a114 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author simon-gladman
date Tue, 23 Jul 2013 01:30:56 -0400
parents 78f59ea7d5d1
children 4ef8fe088602
files velvet_optimiser_wrapper_vlsci.pl
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/velvet_optimiser_wrapper_vlsci.pl	Tue Jul 23 00:54:48 2013 -0400
+++ b/velvet_optimiser_wrapper_vlsci.pl	Tue Jul 23 01:30:56 2013 -0400
@@ -45,7 +45,7 @@
 }
 
 #try and split some of it up..
-#my $VOPT_PATH = shift @stuff;
+my $VOPT_PATH = shift @stuff;
 
 #kmer stuff
 my $sk = shift @stuff;
@@ -135,8 +135,9 @@
 $cmd .= " 2> $stderr";
 
 print "\n$cmd\n";
+print "PATH=" . system("echo $PATH") . "\n";
 
-print "about to run the command!";
+print "about to run the command!\n";
 
 if(system($cmd) == 0) {
     #copy the files to the new places and delete the directory..