Mercurial > repos > simon-gladman > trimmomatic_032
changeset 8:18bd222a110e draft
Uploaded
author | simon-gladman |
---|---|
date | Thu, 10 Jul 2014 13:25:10 -0400 |
parents | 76d1aebc44bf |
children | 2c4e0eab2cae |
files | trimmomatic_wrapper.pl |
diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/trimmomatic_wrapper.pl Thu Jul 10 13:24:53 2014 -0400 +++ b/trimmomatic_wrapper.pl Thu Jul 10 13:25:10 2014 -0400 @@ -45,11 +45,11 @@ my $cmd = "java -cp $jar org.usadellab.trimmomatic.Trimmomatic"; -if($stuff{"paired"} eq "True"){ - $cmd .= "PE"; +if($stuff{"paired"} eq "single"){ + $cmd .= "SE"; } else { - $cmd .= "SE"; + $cmd .= "PE"; } $cmd .= " -threads $numthreads";