Mercurial > repos > simon-gladman > package_velvet_1_2
changeset 0:b38f6a7d6ca5 draft
Uploaded
author | simon-gladman |
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date | Tue, 16 Jul 2013 01:27:23 -0400 |
parents | |
children | 068cee36394d |
files | tool_dependencies.xml |
diffstat | 1 files changed, 27 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Jul 16 01:27:23 2013 -0400 @@ -0,0 +1,27 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="package_velvet_1_2" version="1.2.08"> + <install version="1.0"> + <actions> + <action type="shell_command">git clone git://github.com/dzerbino/velvet.git</action> + <action type="shell_command">make -i CATEGORIES=4 MAXKMERLENGTH=191 OPENMP=1</action> + <action type="move_file"> + <source>velvetg</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="move_file"> + <source>velveth</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + <action type="shell_command">chmod +x $INSTALL_DIR/bin/velveth</action> + <action type="shell_command">chmod +x $INSTALL_DIR/bin/velvetg</action> + </actions> + </install> + <readme> + Installs velvet latest version. (called 1.2.08 for Galaxy purposes.) + </readme> + </package> +</tool_dependency>