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changeset 0:504bf58a4022 draft

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Uploaded
author simon-gladman
date Mon, 24 Feb 2014 00:41:05 -0500
parents
children 773107d91822
files degust.xml
diffstat 1 files changed, 37 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/degust.xml	Mon Feb 24 00:41:05 2014 -0500
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+<tool id="degust" name="Degust" version="1.0.0">
+    <description>RNA Seq analysis and visualisation.</description>
+    <command interpreter="python">
+        degust.py
+        --tab
+        --cuffdiff
+        $dataset
+        > 
+        $output
+    </command>
+    <inputs>
+        <param name="dataset" type="data" format="tabular" label="Cuffdiff gene/transcript expression testing output" help="Cuffdiff output to visualise."/>
+    </inputs>
+    <outputs>
+        <data name="output" format="html" label="${tool.name} on ${on_string}: html"/>
+    </outputs>
+    
+    <help>
+**Degust**
+RNA Seq analysis and visualisation.
+
+Written by David Powell - Victorian Bioinformatics Consortium 2012 - 2014
+
+Wrapped by Simon Gladman - Victorian Bioinformatics Consortium 2014
+
+0.11.2
+------
+
+Outputs in html format.
+    
+------
+
+Inputs:
+
+CuffDiff gene differential expression dataset
+    </help>
+</tool>