Mercurial > repos > simon-gladman > degust
changeset 2:1e4307fd98f3 draft
Uploaded
author | simon-gladman |
---|---|
date | Mon, 24 Feb 2014 19:02:18 -0500 |
parents | 773107d91822 |
children | a50be29ea995 |
files | degust.xml |
diffstat | 1 files changed, 29 insertions(+), 2 deletions(-) [+] |
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--- a/degust.xml Mon Feb 24 00:41:33 2014 -0500 +++ b/degust.xml Mon Feb 24 19:02:18 2014 -0500 @@ -3,13 +3,14 @@ <command interpreter="python"> degust.py --tab - --cuffdiff + $cuffdiff $dataset > $output </command> <inputs> <param name="dataset" type="data" format="tabular" label="Cuffdiff gene/transcript expression testing output" help="Cuffdiff output to visualise."/> + <param name="cuffdiff" type="boolean" truevalue="--cuffdiff" falsevalue="" checked="true" label="Cuffdiff output" help="Is this cuffdiff output?"/> </inputs> <outputs> <data name="output" format="html" label="${tool.name} on ${on_string}: html"/> @@ -32,6 +33,32 @@ Inputs: -CuffDiff gene differential expression dataset +Gene differential expression dataset + +------ + +# Degust (formerly known as DGE-Vis) + +* Visualise RNA-seq differential expression data. +* Perform your own DGE analysis to analyse from your own "counts" file. + +Access a public web service running [Degust](http://www.vicbioinformatics.com/degust). + +View a [short video](https://www.youtube.com/watch?v=ucucQ_LtZ1g) of the interface in use. + +Read a summary on the <a href='http://victorian-bioinformatics-consortium.github.io/degust/'>Degust home page</a>. + + +## Contributing ## +Feel free to contribute with pull requests, bug reports or enhancement suggestions. + +## Known Issues + +#### Heatmap + + * Clustering algorithm is naive greedy N^2. So, not fast, and not a great clustering. + +## License ## +Degust is released under the GPL v3 (or later) license, see <a href='http://github.com/Victorian-Bioinformatics-Consortium/degust/blob/master/COPYING.txt'>COPYING.txt</a> </help> </tool>