Mercurial > repos > shians > shrnaseq

changeset 29:e9cfe1e33651

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- Removed shrnaseq dependency
author shian_su <registertonysu@gmail.com>
date Thu, 20 Nov 2014 10:26:39 +1100
parents 973db6eebb7e
children fb89711353f4
files tool_dependencies.xml
diffstat 1 files changed, 11 insertions(+), 20 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Nov 20 00:23:03 2014 +1100
+++ b/tool_dependencies.xml	Thu Nov 20 10:26:39 2014 +1100
@@ -2,25 +2,16 @@
 <tool_dependency>
     <package name="R_3_1_1" version="3.1.1">
         <repository name="package_r_3_1_1" owner="fubar" prior_installation_required="True" />
-    </package>
-    <package name="shrnaseq" version="1.2.1">
-        <install version="1.2.1">
-            <actions>
-                <action type="setup_r_environment">
-                    
-                    <repository name="package_r_3_1_1" owner="fubar">
-                        <package name="R_3_1_1" version="3.1.1" />
-                    </repository>
-                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/locfit_1.5-9.1.tar.gz</package>
-                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/statmod_1.4.20.tar.gz</package>
-                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/limma_3.20.9.tar.gz</package>
-                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/edgeR_3.6.8.tar.gz</package>
-                </action>
-            </actions>
-        </install>
-        <readme>
-            shrnaseq analysis using edgeR bioConductor package.
-            http://bioconductor.org/packages/release/bioc/html/edgeR.html
-        </readme>
+        <actions>
+            <action type="setup_r_environment">
+                <repository name="package_r_3_1_1" owner="fubar">
+                    <package name="R_3_1_1" version="3.1.1" />
+                </repository>
+                <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/locfit_1.5-9.1.tar.gz</package>
+                <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/statmod_1.4.20.tar.gz</package>
+                <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/limma_3.20.9.tar.gz</package>
+                <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/edgeR_3.6.8.tar.gz</package>
+            </action>
+        </actions>
     </package>
 </tool_dependency>