Mercurial > repos > shians > shrnaseq

changeset 9:cd53d419af28

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- Added dependency file
author shian_su <registertonysu@gmail.com>
date Wed, 19 Nov 2014 11:56:02 +1100
parents 02d484876935
children d36d60a17534
files tool_dependencies.xml
diffstat 1 files changed, 26 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Nov 19 11:56:02 2014 +1100
@@ -0,0 +1,26 @@
+<?xml version="1.0"?>
+<tool_dependency>
+        <package name="R_3_1_1" version="3.1.1">
+        <repository name="package_r_3_1_1" owner="fubar" prior_installation_required="True" />
+    </package>
+    <package name="shrnaseq" version="1.0.10">
+        <install version="1.0">
+            <actions>
+                <action type="setup_r_environment">
+
+                    <repository name="package_r_3_1_1" owner="fubar">
+                        <package name="R_3_1_1" version="3.1.1" />
+                    </repository>
+                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/locfit_1.5-9.1.tar.gz</package>
+                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/statmod_1.4.20.tar.gz</package>
+                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/limma_3.20.9.tar.gz</package>
+                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/edgeR_3.6.8.tar.gz</package>
+                </action>
+            </actions>
+        </install>
+        <readme>
+          shrnaseq analysis using edgeR bioConductor package.
+          http://bioconductor.org/packages/release/bioc/html/edgeR.html
+        </readme>
+    </package>
+</tool_dependency>