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changeset 44:0d8bb4202526

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- Replaced shrnaseq dependency with deseq
author shian_su <registertonysu@gmail.com>
date Thu, 20 Nov 2014 14:18:25 +1100
parents 73c3673ac6ad
children a2881999c454
files tool_dependencies.xml
diffstat 1 files changed, 7 insertions(+), 15 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Nov 20 11:20:09 2014 +1100
+++ b/tool_dependencies.xml	Thu Nov 20 14:18:25 2014 +1100
@@ -2,20 +2,12 @@
 <tool_dependency>
     
     <package name="R_3_1_1" version="3.1.1">
-        <install version="1.0">
-            <repository name="package_r_3_1_1" owner="fubar" prior_installation_required="True" />
-            <actions>
-                <action type="setup_r_environment">
-                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/locfit_1.5-9.1.tar.gz</package>
-                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/statmod_1.4.20.tar.gz</package>
-                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/limma_3.20.9.tar.gz</package>
-                    <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/edgeR_3.6.8.tar.gz</package>
-                </action>
-            </actions>
-        </install>
-        <readme>
-            shrnaseq analysis using edgeR bioConductor package.
-            http://bioconductor.org/packages/release/bioc/html/edgeR.html
-        </readme>
+        <repository name="package_r_3_1_1" owner="fubar" prior_installation_required="True" />
     </package>
+    
+    <package name="deseq2" version="1.2.10">
+        <repository name="package_deseq2_1_2_10" owner="iuc"/>
+    </package>
+    
+    
 </tool_dependency>