Mercurial > repos > shians > package_shrnaseq_1_2_1

changeset 10:d1a192575649

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- Corrected installation path
author shian_su <registertonysu@gmail.com>
date Thu, 20 Nov 2014 15:27:55 +1100
parents f4ff920fcd33
children 44656e4d5f82
files tool_dependencies.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Nov 20 15:26:33 2014 +1100
+++ b/tool_dependencies.xml	Thu Nov 20 15:27:55 2014 +1100
@@ -1,9 +1,10 @@
 <?xml version="1.0"?>
 <tool_dependency>
+    <!--
     <package name="R_3_1_1" version="3.1.1">
         <repository name="package_r_3_1_1" owner="fubar" prior_installation_required="True" />
     </package>
-
+-->
     <package name="shrnaseq" version="1.2.1">
         <install version="1.0">
             <actions>
@@ -19,7 +20,7 @@
                 <action type="make_directory">$INSTALL_DIR/shrnaseq/</action>
                 <action type="shell_command">
                     export PATH=$PATH:$R_HOME/bin &amp;&amp;
-                    export R_LIBS=$INSTALL_DIR/deseq2/ &amp;&amp;
+                    export R_LIBS=$INSTALL_DIR/shrnaseq/ &amp;&amp;
                     Rscript -e "install.packages(c('locfit_1.5-9.1.tar.gz', 'statmod_1.4.20.tar.gz', 'limma_3.22.1.tar.gz', 'edgeR_3.8.3.tar.gz'),lib='$INSTALL_DIR/shrnaseq/', repos=NULL, dependencies=FALSE)"
                 </action>
                 <action type="set_environment">