Mercurial > repos > shians > package_shrnaseq_1_2_1

changeset 6:1cf8c9ce7248

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- Restored full file
author shian_su <registertonysu@gmail.com>
date Thu, 20 Nov 2014 15:05:03 +1100
parents b09185fed619
children e35291a2d6fa
files tool_dependencies.xml
diffstat 1 files changed, 0 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Nov 20 15:04:02 2014 +1100
+++ b/tool_dependencies.xml	Thu Nov 20 15:05:03 2014 +1100
@@ -17,14 +17,12 @@
                 <action type="download_file">https://github.com/Shians/diffexp/raw/master/dependencies/statmod_1.4.20.tar.gz</action>
                 <action type="download_file">https://github.com/Shians/diffexp/raw/master/dependencies/limma_3.22.1.tar.gz</action>
                 <action type="download_file">https://github.com/Shians/diffexp/raw/master/dependencies/edgeR_3.8.3.tar.gz</action>
-                <!--
                 <action type="make_directory">$INSTALL_DIR/shrnaseq/</action>
                 <action type="shell_command">
                     export PATH=$PATH:$R_HOME/bin &amp;&amp;
                     export R_LIBS=$INSTALL_DIR/deseq2/ &amp;&amp;
                     Rscript -e "install.packages(c('locfit_1.5-9.1.tar.gz', 'statmod_1.4.20.tar.gz', 'limma_3.22.1.tar.gz', 'edgeR_3.8.3.tar.gz'),lib='$INSTALL_DIR/shrnaseq/', repos=NULL, dependencies=FALSE)"
                 </action>
-                 -->
                 <action type="set_environment">
                     <environment_variable action="append_to" name="R_LIBS">$INSTALL_DIR/shrnaseq/</environment_variable>
                 </action>