# HG changeset patch
# User shian_su <registertonysu@gmail.com>
# Date 1416456303 -39600
# Node ID 1cf8c9ce72487b0592a986962f0b0a66a4811a3e
# Parent  b09185fed619bb99a73ec7512bd518d90940dbae
- Restored full file

diff -r b09185fed619 -r 1cf8c9ce7248 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Nov 20 15:04:02 2014 +1100
+++ b/tool_dependencies.xml	Thu Nov 20 15:05:03 2014 +1100
@@ -17,14 +17,12 @@
                 <action type="download_file">https://github.com/Shians/diffexp/raw/master/dependencies/statmod_1.4.20.tar.gz</action>
                 <action type="download_file">https://github.com/Shians/diffexp/raw/master/dependencies/limma_3.22.1.tar.gz</action>
                 <action type="download_file">https://github.com/Shians/diffexp/raw/master/dependencies/edgeR_3.8.3.tar.gz</action>
-                <!--
                 <action type="make_directory">$INSTALL_DIR/shrnaseq/</action>
                 <action type="shell_command">
                     export PATH=$PATH:$R_HOME/bin &amp;&amp;
                     export R_LIBS=$INSTALL_DIR/deseq2/ &amp;&amp;
                     Rscript -e "install.packages(c('locfit_1.5-9.1.tar.gz', 'statmod_1.4.20.tar.gz', 'limma_3.22.1.tar.gz', 'edgeR_3.8.3.tar.gz'),lib='$INSTALL_DIR/shrnaseq/', repos=NULL, dependencies=FALSE)"
                 </action>
-                 -->
                 <action type="set_environment">
                     <environment_variable action="append_to" name="R_LIBS">$INSTALL_DIR/shrnaseq/</environment_variable>
                 </action>