Mercurial > repos > sh477 > ensembl_vep
changeset 2:0f4f67891031 draft default tip
Uploaded
| author | sh477 |
|---|---|
| date | Wed, 06 Apr 2022 16:26:36 +0000 |
| parents | 36e0e1c3fd71 |
| children | |
| files | tool-data/dbkeys.loc.sample tool-data/vep_versioned_annotation_cache.loc.sample tool_data_table_conf.xml.sample |
| diffstat | 3 files changed, 24 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/dbkeys.loc.sample Wed Apr 06 16:26:36 2022 +0000 @@ -0,0 +1,1 @@ +#<dbkey> <display_name> <len_file_path> \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/vep_versioned_annotation_cache.loc.sample Wed Apr 06 16:26:36 2022 +0000 @@ -0,0 +1,11 @@ +#This file describes vep cache data and its metadata available on the server. +#The data table has the format (white space characters are TAB characters): +# +#<value> <dbkey> <version> <cachetype> <name> <species> <path> +# +#So, vep_versioned_annotation_cache.loc tables could look like this: +# +#homo_sapiens_vep_105_GRCh38 hg38 105 default Homo sapiens hg38 (V105) homo_sapiens /path/to/vep_versioned_annotation_cache/105/hg38/default +#homo_sapiens_refseq_vep_105_GRCh38 hg38 105 refseq Homo sapiens hg38 (V105, Refseq) homo_sapiens /path/to/vep_versioned_annotation_cache/105/hg38/refseq +#homo_sapiens_merged_vep_105_GRCh38 hg38 105 merged Homo sapiens hg38 (V105, Merged) homo_sapiens /path/to/vep_versioned_annotation_cache/105/hg38/merged +# \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.sample Wed Apr 06 16:26:36 2022 +0000 @@ -0,0 +1,12 @@ +<tables> + <!-- Table of installed versioned vep cache data --> + <table name="vep_versioned_annotation_cache" comment_char="#"> + <columns>value, dbkey, version, cachetype, name, species, path</columns> + <file path="tool-data/vep_versioned_annotation_cache.loc" /> + </table> + <!-- Locations of dbkeys and len files under genome directory --> + <table name="__dbkeys__" comment_char="#"> + <columns>value, name, len_path</columns> + <file path="tool-data/dbkeys.loc" /> + </table> +</tables> \ No newline at end of file