Mercurial > repos > sh477 > data_manager_vep_cache_downloader
changeset 3:a7f871f7d3df draft
Minor fixes in python script
| author | sh477 |
|---|---|
| date | Tue, 22 Feb 2022 17:27:55 +0000 |
| parents | 612026ea6db5 |
| children | 97cd72b5130e |
| files | data_manager/data_manager_vep_cache_download.py |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager/data_manager_vep_cache_download.py Tue Feb 22 16:26:44 2022 +0000 +++ b/data_manager/data_manager_vep_cache_download.py Tue Feb 22 17:27:55 2022 +0000 @@ -19,8 +19,8 @@ # Process parameters for metadata and file download url = params['param_dict']['url'].rstrip("/") + "/" + params['param_dict']['file_name'].lstrip("/") m = re.search(r"_([^_]*?)_vep_(\d+?)_", params['param_dict']['file_name']) - version = str(m.group(1)) - cache_type = m.group(0) if m.group(0) == "merged" or m.group(0) == "refseq" else "default" + version = str(m.group(2)) + cache_type = m.group(1) if m.group(1) == "merged" or m.group(1) == "refseq" else "default" # Download and extract given cache archive, remove archive afterwards final_file, headers = urlretrieve(url, os.path.join(target_directory, params['param_dict']['file_name'])) @@ -37,7 +37,7 @@ 'value': params['param_dict']['file_name'].strip(".tar.gz"), 'dbkey': params['param_dict']['dbkey'], 'version': version, - 'cachetype': ctype, + 'cachetype': cache_type, 'name': params['param_dict']['display_name'], 'path': './%s' % params['param_dict']['file_name'].strip(".tar.gz") }