Mercurial > repos > serranop > usearch

changeset 5:68305120fd75 draft

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Updated the XML and removed the executable
author serranop
date Fri, 13 Sep 2013 13:55:34 -0400
parents 4e8832829f07
children d0974e1ff717
files usearch usearch_fastq_mergepairs.xml
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
Binary file usearch has changed
--- a/usearch_fastq_mergepairs.xml	Fri Sep 13 13:49:52 2013 -0400
+++ b/usearch_fastq_mergepairs.xml	Fri Sep 13 13:55:34 2013 -0400
@@ -4,13 +4,13 @@
     <command>usearch
         -fastq_mergepairs '$input_forward'
         -reverse '$input_reverse'
-        -fastq_qmaxout $qmaxout
+        -fastq_qmax $qmax
         -fastqout '$output'
     </command>
     <inputs>
         <param name='input_forward' type='data' format='fastq,fastqsanger,fastqcssanger' label='The FASTQ filename for the forward reads' />
         <param name='input_reverse' type='data' format='fastq,fastqsanger,fastqcssanger' label='The FASTQ filename for the reverse reads' />
-        <param name='qmaxout' type='integer' value='41' label='Maximum Q score (input files).' />
+        <param name='qmax' type='integer' value='41' label='Maximum Q score (input files).' />
     </inputs>
     <outputs>
         <data name='output' format='fastq' label="Merge result" />
@@ -19,7 +19,7 @@
         <test>
           <param name="input_forward" value="fastq_mergepairs_input1.fq" ftype="fastqsanger" />
           <param name="input_reverse" value="fastq_mergepairs_input2.fq" ftype="fastqsanger" />
-          <param name="qmaxout" value="65" />
+          <param name="qmax" value="65" />
           <output name="output" file="fastq_mergepairs_output.fq" />
         </test>
     </tests>