Mercurial > repos > serranop > usearch
changeset 11:3a85f43cfa4b draft
Updated option
| author | serranop |
|---|---|
| date | Fri, 13 Sep 2013 15:44:19 -0400 |
| parents | af823fe7772b |
| children | eec0db6ca419 |
| files | usearch_fastq_mergepairs.xml |
| diffstat | 1 files changed, 2 insertions(+), 7 deletions(-) [+] |
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--- a/usearch_fastq_mergepairs.xml Fri Sep 13 15:24:28 2013 -0400 +++ b/usearch_fastq_mergepairs.xml Fri Sep 13 15:44:19 2013 -0400 @@ -4,9 +4,7 @@ <command>usearch -fastq_mergepairs '$input_forward' -reverse '$input_reverse' -#if $minovlen.minovlen_val == '-1': --fastq_minovlen 0 -#else +#if $minovlen != '0': -fastq_minovlen $minovlen #end if -fastq_qmax $qmax @@ -15,10 +13,7 @@ <inputs> <param name="input_forward" type="data" format="fastq,fastqsanger,fastqcssanger" label="File with forward reads" /> <param name="input_reverse" type="data" format="fastq,fastqsanger,fastqcssanger" label="File with reverse reads" /> - <conditional name="minovlen"> - <param name="minovlen_val" type="integer" value="-1" label="Minimum length of the overlap" help="'-1' means no minimum." /> - <when value="-1"></when> - </conditional> + <param name="minovlen" type="integer" value="0" label="Minimum length of the overlap" help="'0' means no minimum." /> <param name="qmax" type="integer" value="41" label="Maximum Q score for input files" /> </inputs> <outputs>