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changeset 8:2ef1c29e783d draft

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Updated the XML
author serranop
date Fri, 13 Sep 2013 14:56:58 -0400
parents 94cda55f1bbb
children 5b3a8f988b81
files usearch_fastq_mergepairs.xml
diffstat 1 files changed, 8 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/usearch_fastq_mergepairs.xml	Fri Sep 13 14:42:10 2013 -0400
+++ b/usearch_fastq_mergepairs.xml	Fri Sep 13 14:56:58 2013 -0400
@@ -2,10 +2,9 @@
     <description>merging of paired reads</description>
     <version_command>usearch -version</version_command>
     <command>usearch
--quiet
 -fastq_mergepairs '$input_forward'
 -reverse '$input_reverse'
-#if $minovlen != '-1':
+#if $minovlen.minovlen_val != '-1':
 -fastq_minovlen $minovlen
 #end if
 -fastq_qmax $qmax
@@ -14,7 +13,13 @@
     <inputs>
         <param name="input_forward" type="data" format="fastq,fastqsanger,fastqcssanger" label="File with forward reads" />
         <param name="input_reverse" type="data" format="fastq,fastqsanger,fastqcssanger" label="File with reverse reads" />
-        <param name="minovlen" type="integer" value="-1" label="Minimum length of the overlap" help="'-1' means no minimum." />
+        <conditional name="minovlen">
+            <param name="minovlen_val" type="integer" value="-1" label="Minimum length of the overlap" help="'-1' means no minimum." />
+            <when value="-1">
+            </when>
+            <when value="0">
+            </when>
+        </conditional>
         <param name="qmax" type="integer" value="41" label="Maximum Q score (input files)." />
     </inputs>
     <outputs>