Mercurial > repos > serranop > usearch

diff usearch_fastq_mergepairs.xml @ 12:eec0db6ca419 draft

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author serranop
date Fri, 13 Sep 2013 15:55:44 -0400
parents 3a85f43cfa4b
children ecf3ba958543
line wrap: on
line diff
--- a/usearch_fastq_mergepairs.xml	Fri Sep 13 15:44:19 2013 -0400
+++ b/usearch_fastq_mergepairs.xml	Fri Sep 13 15:55:44 2013 -0400
@@ -1,7 +1,10 @@
 <tool id="usearch_fastq_mergepairs" name="usearch fastq_mergepairs" version="0.0.1">
     <description>merging of paired reads</description>
     <version_command>usearch -version</version_command>
-    <command>usearch
+    <command interpreter='bash'>usearch_wrapper.sh
+usearch
+-fastq_minovlen 0
+-quiet
 -fastq_mergepairs '$input_forward'
 -reverse '$input_reverse'
 #if $minovlen != '0':