Mercurial > repos > scottx611x > qualimap2_bamqc
changeset 9:e14c864ee2b0 draft
planemo upload for repository https://github.com/scottx611x/qualimap2 commit 070be0ead8afa05bfbb3075f075a97e7c32d619e-dirty
author | scottx611x |
---|---|
date | Thu, 26 Jul 2018 11:44:20 -0400 |
parents | 4b8ec6cb22cc |
children | 4e5e0a116434 |
files | qualimap_bamqc.xml |
diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
line wrap: on
line diff
--- a/qualimap_bamqc.xml Thu Jul 26 11:36:28 2018 -0400 +++ b/qualimap_bamqc.xml Thu Jul 26 11:44:20 2018 -0400 @@ -12,7 +12,7 @@ qualimap_bamqc.py --input_file $input_realigned_bam_file --out_dir qualimap_results - --out_genome_file qualimap_results/$genome_coverage + --out_genome_file $genome_coverage --java_mem_size $mem_size </command> <inputs> @@ -21,7 +21,7 @@ </inputs> <outputs> <data format="txt" name="genome_coverage" label="Qualimap BamQC coverage report"> - <discover_datasets pattern="genome_coverage*" visible="true" ext="txt" directory="qualimap_results" assign_primary_output="true"/> + <discover_datasets pattern="genome_coverage*" visible="true" ext="txt" assign_primary_output="true"/> </data> <data format="txt" name="genome_results" label="Qualimap BamQC results"> <discover_datasets pattern="genome_results*" visible="true" ext="txt" directory="qualimap_results" assign_primary_output="true"/>