Mercurial > repos > scottx611x > qualimap2_bamqc

comparison qualimap_bamqc.py @ 31:a77bae54b1c7 draft

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planemo upload for repository https://github.com/scottx611x/qualimap2 commit dc78b7c4b1780b316ca4aba2be247969ac1100ec-dirty
author scottx611x
date Thu, 26 Jul 2018 16:43:38 -0400
parents 418ee04dd1b2
children 90170eb47bd1
comparison
equal deleted inserted replaced
30:418ee04dd1b2 31:a77bae54b1c7
37 args.input_file, 37 args.input_file,
38 args.out_genome_file, 38 args.out_genome_file,
39 args.java_mem_size 39 args.java_mem_size
40 ) 40 )
41 41
42 shutil.move(OUTPUT_DIR + "/genome_results.txt", "genome_results.txt") 42 shutil.move(OUTPUT_DIR + "/genome_results.txt", "./genome_results.txt")
43 shutil.move(OUTPUT_DIR + "/qualimapReport.html", "qualimapReport.html") 43 shutil.move(OUTPUT_DIR + "/qualimapReport.html", "./qualimapReport.html")
44 shutil.make_archive( 44 shutil.make_archive(
45 'raw_data_qualimapReport', 45 './raw_data_qualimapReport',
46 'zip', 46 'zip',
47 OUTPUT_DIR + '/raw_data_qualimapReport' 47 OUTPUT_DIR + '/raw_data_qualimapReport'
48 ) 48 )
49 49
50 50