Mercurial > repos > scottx611x > qualimap2_bamqc

comparison qualimap_bamqc.py @ 44:4cfe71d40d44 draft

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planemo upload for repository https://github.com/scottx611x/qualimap2 commit 9fafbbc012490e70d06fcef4704a1e4a45b382c5-dirty
author scottx611x
date Sun, 29 Jul 2018 14:19:07 -0400
parents 2395818cb1f1
children
comparison
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43:2395818cb1f1 44:4cfe71d40d44
33 parser.add_argument('--out_zip') 33 parser.add_argument('--out_zip')
34 parser.add_argument('--java_mem_size') 34 parser.add_argument('--java_mem_size')
35 35
36 args = parser.parse_args() 36 args = parser.parse_args()
37 37
38 qualimap_bamqc( 38 qualimap_bamqc(args.input_file, args.java_mem_size)
39 args.input_file,
40 QUALIMAP_OUPUT_DIR,
41 args.java_mem_size
42 )
43 39
44 shutil.make_archive( 40 shutil.make_archive(
45 'raw_data_qualimapReport', 41 'raw_data_qualimapReport',
46 'zip', 42 'zip',
47 os.path.join(QUALIMAP_OUPUT_DIR, 'raw_data_qualimapReport') 43 os.path.join(QUALIMAP_OUPUT_DIR, 'raw_data_qualimapReport')