comparison qualimap_bamqc.py @ 36:0e6aeed62025 draft

planemo upload for repository https://github.com/scottx611x/qualimap2 commit dc78b7c4b1780b316ca4aba2be247969ac1100ec-dirty

35:a3e9c80894dd

        args.out_genome_file,
        args.out_dir,
        args.java_mem_size
    )

    print(os.listdir(args.out_dir))

    shutil.move(args.out_dir + "/genome_results.txt", "./genome_results.txt")
    shutil.move(args.out_dir + "/qualimapReport.html", "./qualimapReport.html")
    shutil.make_archive(
        './raw_data_qualimapReport',
        'zip',
        args.out_dir + '/raw_data_qualimapReport'
    )


if __name__ == "__main__":
    main()

36:0e6aeed62025

        args.out_genome_file,
        args.out_dir,
        args.java_mem_size
    )

    print(os.listdir(os.getcwd()))
    print(os.listdir(args.out_dir))

    shutil.move(args.out_dir + "/genome_results.txt", "./genome_results.txt")
    shutil.move(args.out_dir + "/qualimapReport.html", "./qualimapReport.html")
    shutil.make_archive(
        './raw_data_qualimapReport',
        'zip',
        args.out_dir + '/raw_data_qualimapReport'
    )

    print(os.listdir(os.getcwd()))
    print(os.listdir(args.out_dir))

if __name__ == "__main__":
    main()