Mercurial > repos > scottx611x > clodius

changeset 8:e9a26c773d95 draft

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planemo upload for repository https://github.com/scottx611x/clodius-galaxy commit 576539e599654ff3fb8ca7687f71fcb4ed146fb6
author scottx611x
date Tue, 14 Nov 2017 12:24:03 -0500
parents 285c22052c4b
children b1390ddacb6a
files test.html
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/test.html	Tue Nov 07 12:24:35 2017 -0500
+++ b/test.html	Tue Nov 14 12:24:03 2017 -0500
@@ -375,7 +375,7 @@
         .success(function(content) { renderTestResults( $.parseJSON(content) ); })
         .failure(function() { alert("Failed to load test data.")} );
       } else {
-        var test_data = {"tests": [{"data": {"status": "success", "inputs": {"to_one_column": "3", "chromosome_one_column": "1", "file_type": "bedpe", "from_one_column": "2", "input_file": {"src": "hda", "id": "2891970512fa2d5a"}, "output_filename": "bedpe_test.out", "chromosome_two_column": "1", "from_two_column": "2", "to_two_column": "3"}, "job": {"inputs": {"input_file": {"src": "hda", "id": "2891970512fa2d5a", "uuid": "943b0105-51c6-4e0c-96b1-7f05334a613a"}}, "update_time": "2017-11-07T17:18:35.623998", "tool_id": "clodius", "outputs": {"output_file": {"src": "hda", "id": "5729865256bc2525", "uuid": "8045b28d-9a90-4fb7-8730-03bd74cfbd24"}}, "stdout": "## chr1_col 1 chr2_col 1 from1_col: 2 from2_col 2 to1_col 3 to2_col 3\noutput_file: bedpe_test.out\nplain\nchrom_names: ['chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr20', 'chr21', 'chr22', 'chrX', 'chrY', 'chrM', 'chr6_ssto_hap7', 'chr6_mcf_hap5', 'chr6_cox_hap2', 'chr6_mann_hap4', 'chr6_apd_hap1', 'chr6_qbl_hap6', 'chr6_dbb_hap3', 'chr17_ctg5_hap1', 'chr4_ctg9_hap1', 'chr1_gl000192_random', 'chrUn_gl000225', 'chr4_gl000194_random', 'chr4_gl000193_random', 'chr9_gl000200_random', 'chrUn_gl000222', 'chrUn_gl000212', 'chr7_gl000195_random', 'chrUn_gl000223', 'chrUn_gl000224', 'chrUn_gl000219', 'chr17_gl000205_random', 'chrUn_gl000215', 'chrUn_gl000216', 'chrUn_gl000217', 'chr9_gl000199_random', 'chrUn_gl000211', 'chrUn_gl000213', 'chrUn_gl000220', 'chrUn_gl000218', 'chr19_gl000209_random', 'chrUn_gl000221', 'chrUn_gl000214', 'chrUn_gl000228', 'chrUn_gl000227', 'chr1_gl000191_random', 'chr19_gl000208_random', 'chr9_gl000198_random', 'chr17_gl000204_random', 'chrUn_gl000233', 'chrUn_gl000237', 'chrUn_gl000230', 'chrUn_gl000242', 'chrUn_gl000243', 'chrUn_gl000241', 'chrUn_gl000236', 'chrUn_gl000240', 'chr17_gl000206_random', 'chrUn_gl000232', 'chrUn_gl000234', 'chr11_gl000202_random', 'chrUn_gl000238', 'chrUn_gl000244', 'chrUn_gl000248', 'chr8_gl000196_random', 'chrUn_gl000249', 'chrUn_gl000246', 'chr17_gl000203_random', 'chr8_gl000197_random', 'chrUn_gl000245', 'chrUn_gl000247', 'chr9_gl000201_random', 'chrUn_gl000235', 'chrUn_gl000239', 'chr21_gl000210_random', 'chrUn_gl000231', 'chrUn_gl000229', 'chrUn_gl000226', 'chr18_gl000207_random']\ncreating rtree\n", "command_line": "clodius aggregate bedpe /tmp/tmpYkKX2P/files/000/dataset_1.dat --assembly hg19  --output-file bedpe_test.out  --chr1-col 1 --from1-col 2 --to1-col 3 --chr2-col 1 --from2-col 2 --to2-col 3", "exit_code": 0, "state": "ok", "create_time": "2017-11-07T17:16:54.768965", "params": {"chromosome_column": "\"\"", "to_one_column": "\"3\"", "from_position_column": "\"2\"", "nan_value": "\"\"", "to_position_column": "\"3\"", "chromosome_one_column": "\"1\"", "file_type": "\"bedpe\"", "from_one_column": "\"2\"", "importance_column": "\"\"", "dbkey": "\"hg17\"", "chromosome_two_column": "\"1\"", "delimiter": "\"\"", "value_column": "\"4\"", "output_filename": "\"bedpe_test.out\"", "from_two_column": "\"2\"", "to_two_column": "\"3\"", "genome_assembly": "\"hg19\"", "has_header": "\"false\"", "chromInfo": "\"/tmp/tmpYkKX2P/galaxy-master/tool-data/shared/ucsc/chrom/hg17.len\"", "max_per_tile": "\"100\""}, "stderr": "", "job_metrics": [], "model_class": "Job", "external_id": "4983", "id": "5729865256bc2525", "user_email": "test@bx.psu.edu"}}, "id": "functional.test_toolbox.TestForTool_clodius.test_tool_000000", "has_data": true}, {"data": {"status": "success", "inputs": {"file_type": "bedfile", "importance_column": "5", "max_per_tile": "20", "output_filename": "bedfile_test.out", "input_file": {"src": "hda", "id": "54f2a3a23292eb07"}}, "job": {"inputs": {"input_file": {"src": "hda", "id": "54f2a3a23292eb07", "uuid": "a5d621e6-5d29-4f26-bd15-f4a7f96717e7"}}, "update_time": "2017-11-07T17:20:08.737619", "tool_id": "clodius", "outputs": {"output_file": {"src": "hda", "id": "8155e4b4bf1581ff", "uuid": "861cf24c-d43e-4ef5-b278-e1f33f6fa5df"}}, "stdout": "chrom_names: ['chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr20', 'chr21', 'chr22', 'chrX', 'chrY', 'chrM', 'chr6_ssto_hap7', 'chr6_mcf_hap5', 'chr6_cox_hap2', 'chr6_mann_hap4', 'chr6_apd_hap1', 'chr6_qbl_hap6', 'chr6_dbb_hap3', 'chr17_ctg5_hap1', 'chr4_ctg9_hap1', 'chr1_gl000192_random', 'chrUn_gl000225', 'chr4_gl000194_random', 'chr4_gl000193_random', 'chr9_gl000200_random', 'chrUn_gl000222', 'chrUn_gl000212', 'chr7_gl000195_random', 'chrUn_gl000223', 'chrUn_gl000224', 'chrUn_gl000219', 'chr17_gl000205_random', 'chrUn_gl000215', 'chrUn_gl000216', 'chrUn_gl000217', 'chr9_gl000199_random', 'chrUn_gl000211', 'chrUn_gl000213', 'chrUn_gl000220', 'chrUn_gl000218', 'chr19_gl000209_random', 'chrUn_gl000221', 'chrUn_gl000214', 'chrUn_gl000228', 'chrUn_gl000227', 'chr1_gl000191_random', 'chr19_gl000208_random', 'chr9_gl000198_random', 'chr17_gl000204_random', 'chrUn_gl000233', 'chrUn_gl000237', 'chrUn_gl000230', 'chrUn_gl000242', 'chrUn_gl000243', 'chrUn_gl000241', 'chrUn_gl000236', 'chrUn_gl000240', 'chr17_gl000206_random', 'chrUn_gl000232', 'chrUn_gl000234', 'chr11_gl000202_random', 'chrUn_gl000238', 'chrUn_gl000244', 'chrUn_gl000248', 'chr8_gl000196_random', 'chrUn_gl000249', 'chrUn_gl000246', 'chr17_gl000203_random', 'chr8_gl000197_random', 'chrUn_gl000245', 'chrUn_gl000247', 'chr9_gl000201_random', 'chrUn_gl000235', 'chrUn_gl000239', 'chr21_gl000210_random', 'chrUn_gl000231', 'chrUn_gl000229', 'chrUn_gl000226', 'chr18_gl000207_random']\n", "command_line": "clodius aggregate bedfile /tmp/tmpYkKX2P/files/000/dataset_3.dat --assembly hg19  --output-file bedfile_test.out   --max-per-tile 20 --importance-column 5", "exit_code": 0, "state": "ok", "create_time": "2017-11-07T17:19:32.794466", "params": {"chromosome_column": "\"\"", "to_one_column": "\"\"", "from_position_column": "\"2\"", "nan_value": "\"\"", "to_position_column": "\"3\"", "chromosome_one_column": "\"\"", "file_type": "\"bedfile\"", "from_one_column": "\"\"", "importance_column": "\"5\"", "dbkey": "\"hg17\"", "chromosome_two_column": "\"\"", "delimiter": "\"\"", "value_column": "\"4\"", "output_filename": "\"bedfile_test.out\"", "from_two_column": "\"\"", "to_two_column": "\"\"", "genome_assembly": "\"hg19\"", "has_header": "\"false\"", "chromInfo": "\"/tmp/tmpYkKX2P/galaxy-master/tool-data/shared/ucsc/chrom/hg17.len\"", "max_per_tile": "\"20\""}, "stderr": "", "job_metrics": [], "model_class": "Job", "external_id": "5342", "id": "8155e4b4bf1581ff", "user_email": "test@bx.psu.edu"}}, "id": "functional.test_toolbox.TestForTool_clodius.test_tool_000001", "has_data": true}, {"data": {"status": "success", "inputs": {"chromosome_column": "2", "from_position_column": "3", "nan_value": "NA", "to_position_column": "4", "input_file": {"src": "hda", "id": "7b55dbb89df8f4e5"}, "file_type": "bedgraph", "output_filename": "bedgraph_test.out", "value_column": "5", "genome_assembly": "grch37", "has_header": true}, "job": {"inputs": {"input_file": {"src": "hda", "id": "7b55dbb89df8f4e5", "uuid": "e6faea8e-31eb-4ec3-8bc0-e2e5a1e4c85f"}}, "update_time": "2017-11-07T17:21:58.466158", "tool_id": "clodius", "outputs": {"output_file": {"src": "hda", "id": "fa6d20d0fb68383f", "uuid": "35e55828-ca85-42a0-8ca8-c0cac24ea8a4"}}, "stdout": "output file: bedgraph_test.out\nchromorder: ['1', '2', '3', '4', '5', '6', '7', '8', '9', '10', '11', '12', '13', '14', '15', '16', '17', '18', '19', '20', '21', '22', 'X', 'Y', 'M', '6_ssto_hap7', '6_mcf_hap5', '6_cox_hap2', '6_mann_hap4', '6_apd_hap1', '6_qbl_hap6', '6_dbb_hap3', '17_ctg5_hap1', '4_ctg9_hap1', '1_gl000192_random', 'Un_gl000225', '4_gl000194_random', '4_gl000193_random', '9_gl000200_random', 'Un_gl000222', 'Un_gl000212', '7_gl000195_random', 'Un_gl000223', 'Un_gl000224', 'Un_gl000219', '17_gl000205_random', 'Un_gl000215', 'Un_gl000216', 'Un_gl000217', '9_gl000199_random', 'Un_gl000211', 'Un_gl000213', 'Un_gl000220', 'Un_gl000218', '19_gl000209_random', 'Un_gl000221', 'Un_gl000214', 'Un_gl000228', 'Un_gl000227', '1_gl000191_random', '19_gl000208_random', '9_gl000198_random', '17_gl000204_random', 'Un_gl000233', 'Un_gl000237', 'Un_gl000230', 'Un_gl000242', 'Un_gl000243', 'Un_gl000241', 'Un_gl000236', 'Un_gl000240', '17_gl000206_random', 'Un_gl000232', 'Un_gl000234', '11_gl000202_random', 'Un_gl000238', 'Un_gl000244', 'Un_gl000248', '8_gl000196_random', 'Un_gl000249', 'Un_gl000246', '17_gl000203_random', '8_gl000197_random', 'Un_gl000245', 'Un_gl000247', '9_gl000201_random', 'Un_gl000235', 'Un_gl000239', '21_gl000210_random', 'Un_gl000231', 'Un_gl000229', 'Un_gl000226', '18_gl000207_random']\nassembly_size: 3137161264\nassembly: grch37\nchrom_info: ['1', '2', '3', '4', '5', '6', '7', '8', '9', '10', '11', '12', '13', '14', '15', '16', '17', '18', '19', '20', '21', '22', 'X', 'Y', 'M', '6_ssto_hap7', '6_mcf_hap5', '6_cox_hap2', '6_mann_hap4', '6_apd_hap1', '6_qbl_hap6', '6_dbb_hap3', '17_ctg5_hap1', '4_ctg9_hap1', '1_gl000192_random', 'Un_gl000225', '4_gl000194_random', '4_gl000193_random', '9_gl000200_random', 'Un_gl000222', 'Un_gl000212', '7_gl000195_random', 'Un_gl000223', 'Un_gl000224', 'Un_gl000219', '17_gl000205_random', 'Un_gl000215', 'Un_gl000216', 'Un_gl000217', '9_gl000199_random', 'Un_gl000211', 'Un_gl000213', 'Un_gl000220', 'Un_gl000218', '19_gl000209_random', 'Un_gl000221', 'Un_gl000214', 'Un_gl000228', 'Un_gl000227', '1_gl000191_random', '19_gl000208_random', '9_gl000198_random', '17_gl000204_random', 'Un_gl000233', 'Un_gl000237', 'Un_gl000230', 'Un_gl000242', 'Un_gl000243', 'Un_gl000241', 'Un_gl000236', 'Un_gl000240', '17_gl000206_random', 'Un_gl000232', 'Un_gl000234', '11_gl000202_random', 'Un_gl000238', 'Un_gl000244', 'Un_gl000248', '8_gl000196_random', 'Un_gl000249', 'Un_gl000246', '17_gl000203_random', '8_gl000197_random', 'Un_gl000245', 'Un_gl000247', '9_gl000201_random', 'Un_gl000235', 'Un_gl000239', '21_gl000210_random', 'Un_gl000231', 'Un_gl000229', 'Un_gl000226', '18_gl000207_random']\nassembly size (max-length) 3137161264\nmax-width 4294967296.0\nmax_zoom: 22.0\nchunk-size: 16777216\nchrom-order ['1' '2' '3' '4' '5' '6' '7' '8' '9' '10' '11' '12' '13' '14' '15' '16'\n '17' '18' '19' '20' '21' '22' 'X' 'Y' 'M' '6_ssto_hap7' '6_mcf_hap5'\n '6_cox_hap2' '6_mann_hap4' '6_apd_hap1' '6_qbl_hap6' '6_dbb_hap3'\n '17_ctg5_hap1' '4_ctg9_hap1' '1_gl000192_random' 'Un_gl000225'\n '4_gl000194_random' '4_gl000193_random' '9_gl000200_random' 'Un_gl000222'\n 'Un_gl000212' '7_gl000195_random' 'Un_gl000223' 'Un_gl000224'\n 'Un_gl000219' '17_gl000205_random' 'Un_gl000215' 'Un_gl000216'\n 'Un_gl000217' '9_gl000199_random' 'Un_gl000211' 'Un_gl000213'\n 'Un_gl000220' 'Un_gl000218' '19_gl000209_random' 'Un_gl000221'\n 'Un_gl000214' 'Un_gl000228' 'Un_gl000227' '1_gl000191_random'\n '19_gl000208_random' '9_gl000198_random' '17_gl000204_random'\n 'Un_gl000233' 'Un_gl000237' 'Un_gl000230' 'Un_gl000242' 'Un_gl000243'\n 'Un_gl000241' 'Un_gl000236' 'Un_gl000240' '17_gl000206_random'\n 'Un_gl000232' 'Un_gl000234' '11_gl000202_random' 'Un_gl000238'\n 'Un_gl000244' 'Un_gl000248' '8_gl000196_random' 'Un_gl000249'\n 'Un_gl000246' '17_gl000203_random' '8_gl000197_random' 'Un_gl000245'\n 'Un_gl000247' '9_gl000201_random' 'Un_gl000235' 'Un_gl000239'\n '21_gl000210_random' 'Un_gl000231' 'Un_gl000229' 'Un_gl000226'\n '18_gl000207_random']\nprogress: 0.00 elapsed: 0.13 remaining: 409459626.75\n", "command_line": "clodius aggregate bedgraph /tmp/tmpYkKX2P/files/000/dataset_5.dat --assembly grch37  --output-file bedgraph_test.out    --chromosome-col 2  --from-pos-col 3  --to-pos-col 4  --value-col 5  --has-header  --nan-value NA", "exit_code": 0, "state": "ok", "create_time": "2017-11-07T17:21:18.198076", "params": {"chromosome_column": "\"2\"", "to_one_column": "\"\"", "from_position_column": "\"3\"", "nan_value": "\"NA\"", "to_position_column": "\"4\"", "chromosome_one_column": "\"\"", "file_type": "\"bedgraph\"", "from_one_column": "\"\"", "importance_column": "\"\"", "dbkey": "\"hg17\"", "chromosome_two_column": "\"\"", "delimiter": "\"\"", "value_column": "\"5\"", "output_filename": "\"bedgraph_test.out\"", "from_two_column": "\"\"", "to_two_column": "\"\"", "genome_assembly": "\"grch37\"", "has_header": "\"true\"", "chromInfo": "\"/tmp/tmpYkKX2P/galaxy-master/tool-data/shared/ucsc/chrom/hg17.len\"", "max_per_tile": "\"100\""}, "stderr": "", "job_metrics": [], "model_class": "Job", "external_id": "5701", "id": "fa6d20d0fb68383f", "user_email": "test@bx.psu.edu"}}, "id": "functional.test_toolbox.TestForTool_clodius.test_tool_000002", "has_data": true}, {"data": {"status": "success", "inputs": {"file_type": "bigwig", "output_filename": "bigwig_test.out", "input_file": {"src": "hda", "id": "683bc220e21425bb"}}, "job": {"inputs": {"input_file": {"src": "hda", "id": "683bc220e21425bb", "uuid": "80c3a3f4-ed95-4717-80ad-71ad3d302736"}}, "update_time": "2017-11-07T17:23:45.217681", "tool_id": "clodius", "outputs": {"output_file": {"src": "hda", "id": "a90a30fafe298e1e", "uuid": "fbbad898-389a-43f3-854f-ea4b8ba88b51"}}, "stdout": "assembly size (max-length) 3137161265\nmax-width 4294967296.0\nmax_zoom: 22.0\nchunk-size: 16777216\nchrom-order ['chr1' 'chr2' 'chr3' 'chr4' 'chr5' 'chr6' 'chr7' 'chr8' 'chr9' 'chr10'\n 'chr11' 'chr12' 'chr13' 'chr14' 'chr15' 'chr16' 'chr17' 'chr18' 'chr19'\n 'chr20' 'chr21' 'chr22' 'chrX' 'chrY' 'chrM' 'chr6_ssto_hap7'\n 'chr6_mcf_hap5' 'chr6_cox_hap2' 'chr6_mann_hap4' 'chr6_apd_hap1'\n 'chr6_qbl_hap6' 'chr6_dbb_hap3' 'chr17_ctg5_hap1' 'chr4_ctg9_hap1'\n 'chr1_gl000192_random' 'chrUn_gl000225' 'chr4_gl000194_random'\n 'chr4_gl000193_random' 'chr9_gl000200_random' 'chrUn_gl000222'\n 'chrUn_gl000212' 'chr7_gl000195_random' 'chrUn_gl000223' 'chrUn_gl000224'\n 'chrUn_gl000219' 'chr17_gl000205_random' 'chrUn_gl000215' 'chrUn_gl000216'\n 'chrUn_gl000217' 'chr9_gl000199_random' 'chrUn_gl000211' 'chrUn_gl000213'\n 'chrUn_gl000220' 'chrUn_gl000218' 'chr19_gl000209_random' 'chrUn_gl000221'\n 'chrUn_gl000214' 'chrUn_gl000228' 'chrUn_gl000227' 'chr1_gl000191_random'\n 'chr19_gl000208_random' 'chr9_gl000198_random' 'chr17_gl000204_random'\n 'chrUn_gl000233' 'chrUn_gl000237' 'chrUn_gl000230' 'chrUn_gl000242'\n 'chrUn_gl000243' 'chrUn_gl000241' 'chrUn_gl000236' 'chrUn_gl000240'\n 'chr17_gl000206_random' 'chrUn_gl000232' 'chrUn_gl000234'\n 'chr11_gl000202_random' 'chrUn_gl000238' 'chrUn_gl000244' 'chrUn_gl000248'\n 'chr8_gl000196_random' 'chrUn_gl000249' 'chrUn_gl000246'\n 'chr17_gl000203_random' 'chr8_gl000197_random' 'chrUn_gl000245'\n 'chrUn_gl000247' 'chr9_gl000201_random' 'chrUn_gl000235' 'chrUn_gl000239'\n 'chr21_gl000210_random' 'chrUn_gl000231' 'chrUn_gl000229' 'chrUn_gl000226'\n 'chr18_gl000207_random']\nprogress: 0.00 elapsed: 0.00 remaining: 14678666.55\nskipping chrom (not in bigWig file): chr2\nskipping chrom (not in bigWig file): chr3\nskipping chrom (not in bigWig file): chr4\nskipping chrom (not in bigWig file): chr5\nskipping chrom (not in bigWig file): chr6\nskipping chrom (not in bigWig file): chr7\nskipping chrom (not in bigWig file): chr8\nskipping chrom (not in bigWig file): chr9\nskipping chrom (not in bigWig file): chr10\nskipping chrom (not in bigWig file): chr11\nskipping chrom (not in bigWig file): chr12\nskipping chrom (not in bigWig file): chr13\nskipping chrom (not in bigWig file): chr14\nskipping chrom (not in bigWig file): chr15\nskipping chrom (not in bigWig file): chr16\nskipping chrom (not in bigWig file): chr17\nskipping chrom (not in bigWig file): chr18\nskipping chrom (not in bigWig file): chr19\nskipping chrom (not in bigWig file): chr20\nskipping chrom (not in bigWig file): chr21\nskipping chrom (not in bigWig file): chr22\nskipping chrom (not in bigWig file): chrX\nskipping chrom (not in bigWig file): chrY\nskipping chrom (not in bigWig file): chrM\nskipping chrom (not in bigWig file): chr6_ssto_hap7\nskipping chrom (not in bigWig file): chr6_mcf_hap5\nskipping chrom (not in bigWig file): chr6_cox_hap2\nskipping chrom (not in bigWig file): chr6_mann_hap4\nskipping chrom (not in bigWig file): chr6_apd_hap1\nskipping chrom (not in bigWig file): chr6_qbl_hap6\nskipping chrom (not in bigWig file): chr6_dbb_hap3\nskipping chrom (not in bigWig file): chr17_ctg5_hap1\nskipping chrom (not in bigWig file): chr4_ctg9_hap1\nskipping chrom (not in bigWig file): chr1_gl000192_random\nskipping chrom (not in bigWig file): chrUn_gl000225\nskipping chrom (not in bigWig file): chr4_gl000194_random\nskipping chrom (not in bigWig file): chr4_gl000193_random\nskipping chrom (not in bigWig file): chr9_gl000200_random\nskipping chrom (not in bigWig file): chrUn_gl000222\nskipping chrom (not in bigWig file): chrUn_gl000212\nskipping chrom (not in bigWig file): chr7_gl000195_random\nskipping chrom (not in bigWig file): chrUn_gl000223\nskipping chrom (not in bigWig file): chrUn_gl000224\nskipping chrom (not in bigWig file): chrUn_gl000219\nskipping chrom (not in bigWig file): chr17_gl000205_random\nskipping chrom (not in bigWig file): chrUn_gl000215\nskipping chrom (not in bigWig file): chrUn_gl000216\nskipping chrom (not in bigWig file): chrUn_gl000217\nskipping chrom (not in bigWig file): chr9_gl000199_random\nskipping chrom (not in bigWig file): chrUn_gl000211\nskipping chrom (not in bigWig file): chrUn_gl000213\nskipping chrom (not in bigWig file): chrUn_gl000220\nskipping chrom (not in bigWig file): chrUn_gl000218\nskipping chrom (not in bigWig file): chr19_gl000209_random\nskipping chrom (not in bigWig file): chrUn_gl000221\nskipping chrom (not in bigWig file): chrUn_gl000214\nskipping chrom (not in bigWig file): chrUn_gl000228\nskipping chrom (not in bigWig file): chrUn_gl000227\nskipping chrom (not in bigWig file): chr1_gl000191_random\nskipping chrom (not in bigWig file): chr19_gl000208_random\nskipping chrom (not in bigWig file): chr9_gl000198_random\nskipping chrom (not in bigWig file): chr17_gl000204_random\nskipping chrom (not in bigWig file): chrUn_gl000233\nskipping chrom (not in bigWig file): chrUn_gl000237\nskipping chrom (not in bigWig file): chrUn_gl000230\nskipping chrom (not in bigWig file): chrUn_gl000242\nskipping chrom (not in bigWig file): chrUn_gl000243\nskipping chrom (not in bigWig file): chrUn_gl000241\nskipping chrom (not in bigWig file): chrUn_gl000236\nskipping chrom (not in bigWig file): chrUn_gl000240\nskipping chrom (not in bigWig file): chr17_gl000206_random\nskipping chrom (not in bigWig file): chrUn_gl000232\nskipping chrom (not in bigWig file): chrUn_gl000234\nskipping chrom (not in bigWig file): chr11_gl000202_random\nskipping chrom (not in bigWig file): chrUn_gl000238\nskipping chrom (not in bigWig file): chrUn_gl000244\nskipping chrom (not in bigWig file): chrUn_gl000248\nskipping chrom (not in bigWig file): chr8_gl000196_random\nskipping chrom (not in bigWig file): chrUn_gl000249\nskipping chrom (not in bigWig file): chrUn_gl000246\nskipping chrom (not in bigWig file): chr17_gl000203_random\nskipping chrom (not in bigWig file): chr8_gl000197_random\nskipping chrom (not in bigWig file): chrUn_gl000245\nskipping chrom (not in bigWig file): chrUn_gl000247\nskipping chrom (not in bigWig file): chr9_gl000201_random\nskipping chrom (not in bigWig file): chrUn_gl000235\nskipping chrom (not in bigWig file): chrUn_gl000239\nskipping chrom (not in bigWig file): chr21_gl000210_random\nskipping chrom (not in bigWig file): chrUn_gl000231\nskipping chrom (not in bigWig file): chrUn_gl000229\nskipping chrom (not in bigWig file): chrUn_gl000226\nskipping chrom (not in bigWig file): chr18_gl000207_random\n", "command_line": "clodius aggregate bigwig /tmp/tmpYkKX2P/files/000/dataset_7.dat --assembly hg19  --output-file bigwig_test.out", "exit_code": 0, "state": "ok", "create_time": "2017-11-07T17:23:06.349033", "params": {"chromosome_column": "\"\"", "to_one_column": "\"\"", "from_position_column": "\"2\"", "nan_value": "\"\"", "to_position_column": "\"3\"", "chromosome_one_column": "\"\"", "file_type": "\"bigwig\"", "from_one_column": "\"\"", "importance_column": "\"\"", "dbkey": "\"hg17\"", "chromosome_two_column": "\"\"", "delimiter": "\"\"", "value_column": "\"4\"", "output_filename": "\"bigwig_test.out\"", "from_two_column": "\"\"", "to_two_column": "\"\"", "genome_assembly": "\"hg19\"", "has_header": "\"false\"", "chromInfo": "\"/tmp/tmpYkKX2P/galaxy-master/tool-data/shared/ucsc/chrom/hg17.len\"", "max_per_tile": "\"100\""}, "stderr": "", "job_metrics": [], "model_class": "Job", "external_id": "6058", "id": "a90a30fafe298e1e", "user_email": "test@bx.psu.edu"}}, "id": "functional.test_toolbox.TestForTool_clodius.test_tool_000003", "has_data": true}], "version": "0.1", "exit_code": 0, "summary": {"num_skips": 0, "num_errors": 0, "num_failures": 0, "num_tests": 4}};
+        var test_data = {"tests": [{"data": {"status": "success", "inputs": {"to_one_column": "3", "chromosome_one_column": "1", "file_type": "bedpe", "from_one_column": "2", "input_file": {"src": "hda", "id": "2891970512fa2d5a"}, "output_filename": "bedpe_test.out", "chromosome_two_column": "1", "from_two_column": "2", "to_two_column": "3"}, "job": {"inputs": {"input_file": {"src": "hda", "id": "2891970512fa2d5a", "uuid": "4f3aae27-e79b-46fa-b702-19f0984d1639"}}, "update_time": "2017-11-14T17:18:27.399009", "tool_id": "clodius", "outputs": {"output_file": {"src": "hda", "id": "5729865256bc2525", "uuid": "c3956a58-afa5-4262-ad63-2f80f91908e6"}}, "stdout": "## chr1_col 1 chr2_col 1 from1_col: 2 from2_col 2 to1_col 3 to2_col 3\noutput_file: bedpe_test.out\nplain\nchrom_names: ['chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr20', 'chr21', 'chr22', 'chrX', 'chrY', 'chrM', 'chr6_ssto_hap7', 'chr6_mcf_hap5', 'chr6_cox_hap2', 'chr6_mann_hap4', 'chr6_apd_hap1', 'chr6_qbl_hap6', 'chr6_dbb_hap3', 'chr17_ctg5_hap1', 'chr4_ctg9_hap1', 'chr1_gl000192_random', 'chrUn_gl000225', 'chr4_gl000194_random', 'chr4_gl000193_random', 'chr9_gl000200_random', 'chrUn_gl000222', 'chrUn_gl000212', 'chr7_gl000195_random', 'chrUn_gl000223', 'chrUn_gl000224', 'chrUn_gl000219', 'chr17_gl000205_random', 'chrUn_gl000215', 'chrUn_gl000216', 'chrUn_gl000217', 'chr9_gl000199_random', 'chrUn_gl000211', 'chrUn_gl000213', 'chrUn_gl000220', 'chrUn_gl000218', 'chr19_gl000209_random', 'chrUn_gl000221', 'chrUn_gl000214', 'chrUn_gl000228', 'chrUn_gl000227', 'chr1_gl000191_random', 'chr19_gl000208_random', 'chr9_gl000198_random', 'chr17_gl000204_random', 'chrUn_gl000233', 'chrUn_gl000237', 'chrUn_gl000230', 'chrUn_gl000242', 'chrUn_gl000243', 'chrUn_gl000241', 'chrUn_gl000236', 'chrUn_gl000240', 'chr17_gl000206_random', 'chrUn_gl000232', 'chrUn_gl000234', 'chr11_gl000202_random', 'chrUn_gl000238', 'chrUn_gl000244', 'chrUn_gl000248', 'chr8_gl000196_random', 'chrUn_gl000249', 'chrUn_gl000246', 'chr17_gl000203_random', 'chr8_gl000197_random', 'chrUn_gl000245', 'chrUn_gl000247', 'chr9_gl000201_random', 'chrUn_gl000235', 'chrUn_gl000239', 'chr21_gl000210_random', 'chrUn_gl000231', 'chrUn_gl000229', 'chrUn_gl000226', 'chr18_gl000207_random']\ncreating rtree\n", "command_line": "clodius aggregate bedpe /tmp/tmp9_WYxw/files/000/dataset_1.dat --assembly hg19  --output-file bedpe_test.out  --chr1-col 1 --from1-col 2 --to1-col 3 --chr2-col 1 --from2-col 2 --to2-col 3", "exit_code": 0, "state": "ok", "create_time": "2017-11-14T17:16:50.609745", "params": {"chromosome_column": "\"\"", "to_one_column": "\"3\"", "from_position_column": "\"2\"", "nan_value": "\"\"", "to_position_column": "\"3\"", "chromosome_one_column": "\"1\"", "file_type": "\"bedpe\"", "from_one_column": "\"2\"", "importance_column": "\"\"", "dbkey": "\"hg17\"", "chromosome_two_column": "\"1\"", "delimiter": "\"\"", "value_column": "\"4\"", "output_filename": "\"bedpe_test.out\"", "from_two_column": "\"2\"", "to_two_column": "\"3\"", "genome_assembly": "\"hg19\"", "has_header": "\"false\"", "chromInfo": "\"/tmp/tmp9_WYxw/galaxy-master/tool-data/shared/ucsc/chrom/hg17.len\"", "max_per_tile": "\"100\""}, "stderr": "", "job_metrics": [], "model_class": "Job", "external_id": "4875", "id": "5729865256bc2525", "user_email": "test@bx.psu.edu"}}, "id": "functional.test_toolbox.TestForTool_clodius.test_tool_000000", "has_data": true}, {"data": {"status": "success", "inputs": {"file_type": "bedfile", "importance_column": "5", "max_per_tile": "20", "output_filename": "bedfile_test.out", "input_file": {"src": "hda", "id": "54f2a3a23292eb07"}}, "job": {"inputs": {"input_file": {"src": "hda", "id": "54f2a3a23292eb07", "uuid": "d2a03ab3-f8e1-4692-9798-a5848f1ee6b7"}}, "update_time": "2017-11-14T17:19:57.863672", "tool_id": "clodius", "outputs": {"output_file": {"src": "hda", "id": "8155e4b4bf1581ff", "uuid": "063c675f-6421-4fe8-bcaa-2b60f573c2ce"}}, "stdout": "chrom_names: ['chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr20', 'chr21', 'chr22', 'chrX', 'chrY', 'chrM', 'chr6_ssto_hap7', 'chr6_mcf_hap5', 'chr6_cox_hap2', 'chr6_mann_hap4', 'chr6_apd_hap1', 'chr6_qbl_hap6', 'chr6_dbb_hap3', 'chr17_ctg5_hap1', 'chr4_ctg9_hap1', 'chr1_gl000192_random', 'chrUn_gl000225', 'chr4_gl000194_random', 'chr4_gl000193_random', 'chr9_gl000200_random', 'chrUn_gl000222', 'chrUn_gl000212', 'chr7_gl000195_random', 'chrUn_gl000223', 'chrUn_gl000224', 'chrUn_gl000219', 'chr17_gl000205_random', 'chrUn_gl000215', 'chrUn_gl000216', 'chrUn_gl000217', 'chr9_gl000199_random', 'chrUn_gl000211', 'chrUn_gl000213', 'chrUn_gl000220', 'chrUn_gl000218', 'chr19_gl000209_random', 'chrUn_gl000221', 'chrUn_gl000214', 'chrUn_gl000228', 'chrUn_gl000227', 'chr1_gl000191_random', 'chr19_gl000208_random', 'chr9_gl000198_random', 'chr17_gl000204_random', 'chrUn_gl000233', 'chrUn_gl000237', 'chrUn_gl000230', 'chrUn_gl000242', 'chrUn_gl000243', 'chrUn_gl000241', 'chrUn_gl000236', 'chrUn_gl000240', 'chr17_gl000206_random', 'chrUn_gl000232', 'chrUn_gl000234', 'chr11_gl000202_random', 'chrUn_gl000238', 'chrUn_gl000244', 'chrUn_gl000248', 'chr8_gl000196_random', 'chrUn_gl000249', 'chrUn_gl000246', 'chr17_gl000203_random', 'chr8_gl000197_random', 'chrUn_gl000245', 'chrUn_gl000247', 'chr9_gl000201_random', 'chrUn_gl000235', 'chrUn_gl000239', 'chr21_gl000210_random', 'chrUn_gl000231', 'chrUn_gl000229', 'chrUn_gl000226', 'chr18_gl000207_random']\n", "command_line": "clodius aggregate bedfile /tmp/tmp9_WYxw/files/000/dataset_3.dat --assembly hg19  --output-file bedfile_test.out   --max-per-tile 20 --importance-column 5", "exit_code": 0, "state": "ok", "create_time": "2017-11-14T17:19:21.695680", "params": {"chromosome_column": "\"\"", "to_one_column": "\"\"", "from_position_column": "\"2\"", "nan_value": "\"\"", "to_position_column": "\"3\"", "chromosome_one_column": "\"\"", "file_type": "\"bedfile\"", "from_one_column": "\"\"", "importance_column": "\"5\"", "dbkey": "\"hg17\"", "chromosome_two_column": "\"\"", "delimiter": "\"\"", "value_column": "\"4\"", "output_filename": "\"bedfile_test.out\"", "from_two_column": "\"\"", "to_two_column": "\"\"", "genome_assembly": "\"hg19\"", "has_header": "\"false\"", "chromInfo": "\"/tmp/tmp9_WYxw/galaxy-master/tool-data/shared/ucsc/chrom/hg17.len\"", "max_per_tile": "\"20\""}, "stderr": "", "job_metrics": [], "model_class": "Job", "external_id": "5234", "id": "8155e4b4bf1581ff", "user_email": "test@bx.psu.edu"}}, "id": "functional.test_toolbox.TestForTool_clodius.test_tool_000001", "has_data": true}, {"data": {"status": "success", "inputs": {"chromosome_column": "2", "from_position_column": "3", "nan_value": "NA", "to_position_column": "4", "input_file": {"src": "hda", "id": "7b55dbb89df8f4e5"}, "file_type": "bedgraph", "output_filename": "bedgraph_test.out", "value_column": "5", "genome_assembly": "grch37", "has_header": true}, "job": {"inputs": {"input_file": {"src": "hda", "id": "7b55dbb89df8f4e5", "uuid": "090ebffd-bcf1-4284-b3dc-046515450f89"}}, "update_time": "2017-11-14T17:21:29.862425", "tool_id": "clodius", "outputs": {"output_file": {"src": "hda", "id": "fa6d20d0fb68383f", "uuid": "8b143e59-9f9b-4244-9976-2479534e8141"}}, "stdout": "output file: bedgraph_test.out\nchromorder: ['1', '2', '3', '4', '5', '6', '7', '8', '9', '10', '11', '12', '13', '14', '15', '16', '17', '18', '19', '20', '21', '22', 'X', 'Y', 'M', '6_ssto_hap7', '6_mcf_hap5', '6_cox_hap2', '6_mann_hap4', '6_apd_hap1', '6_qbl_hap6', '6_dbb_hap3', '17_ctg5_hap1', '4_ctg9_hap1', '1_gl000192_random', 'Un_gl000225', '4_gl000194_random', '4_gl000193_random', '9_gl000200_random', 'Un_gl000222', 'Un_gl000212', '7_gl000195_random', 'Un_gl000223', 'Un_gl000224', 'Un_gl000219', '17_gl000205_random', 'Un_gl000215', 'Un_gl000216', 'Un_gl000217', '9_gl000199_random', 'Un_gl000211', 'Un_gl000213', 'Un_gl000220', 'Un_gl000218', '19_gl000209_random', 'Un_gl000221', 'Un_gl000214', 'Un_gl000228', 'Un_gl000227', '1_gl000191_random', '19_gl000208_random', '9_gl000198_random', '17_gl000204_random', 'Un_gl000233', 'Un_gl000237', 'Un_gl000230', 'Un_gl000242', 'Un_gl000243', 'Un_gl000241', 'Un_gl000236', 'Un_gl000240', '17_gl000206_random', 'Un_gl000232', 'Un_gl000234', '11_gl000202_random', 'Un_gl000238', 'Un_gl000244', 'Un_gl000248', '8_gl000196_random', 'Un_gl000249', 'Un_gl000246', '17_gl000203_random', '8_gl000197_random', 'Un_gl000245', 'Un_gl000247', '9_gl000201_random', 'Un_gl000235', 'Un_gl000239', '21_gl000210_random', 'Un_gl000231', 'Un_gl000229', 'Un_gl000226', '18_gl000207_random']\nassembly_size: 3137161264\nassembly: grch37\nchrom_info: ['1', '2', '3', '4', '5', '6', '7', '8', '9', '10', '11', '12', '13', '14', '15', '16', '17', '18', '19', '20', '21', '22', 'X', 'Y', 'M', '6_ssto_hap7', '6_mcf_hap5', '6_cox_hap2', '6_mann_hap4', '6_apd_hap1', '6_qbl_hap6', '6_dbb_hap3', '17_ctg5_hap1', '4_ctg9_hap1', '1_gl000192_random', 'Un_gl000225', '4_gl000194_random', '4_gl000193_random', '9_gl000200_random', 'Un_gl000222', 'Un_gl000212', '7_gl000195_random', 'Un_gl000223', 'Un_gl000224', 'Un_gl000219', '17_gl000205_random', 'Un_gl000215', 'Un_gl000216', 'Un_gl000217', '9_gl000199_random', 'Un_gl000211', 'Un_gl000213', 'Un_gl000220', 'Un_gl000218', '19_gl000209_random', 'Un_gl000221', 'Un_gl000214', 'Un_gl000228', 'Un_gl000227', '1_gl000191_random', '19_gl000208_random', '9_gl000198_random', '17_gl000204_random', 'Un_gl000233', 'Un_gl000237', 'Un_gl000230', 'Un_gl000242', 'Un_gl000243', 'Un_gl000241', 'Un_gl000236', 'Un_gl000240', '17_gl000206_random', 'Un_gl000232', 'Un_gl000234', '11_gl000202_random', 'Un_gl000238', 'Un_gl000244', 'Un_gl000248', '8_gl000196_random', 'Un_gl000249', 'Un_gl000246', '17_gl000203_random', '8_gl000197_random', 'Un_gl000245', 'Un_gl000247', '9_gl000201_random', 'Un_gl000235', 'Un_gl000239', '21_gl000210_random', 'Un_gl000231', 'Un_gl000229', 'Un_gl000226', '18_gl000207_random']\nassembly size (max-length) 3137161264\nmax-width 4294967296.0\nmax_zoom: 22.0\nchunk-size: 16777216\nchrom-order ['1' '2' '3' '4' '5' '6' '7' '8' '9' '10' '11' '12' '13' '14' '15' '16'\n '17' '18' '19' '20' '21' '22' 'X' 'Y' 'M' '6_ssto_hap7' '6_mcf_hap5'\n '6_cox_hap2' '6_mann_hap4' '6_apd_hap1' '6_qbl_hap6' '6_dbb_hap3'\n '17_ctg5_hap1' '4_ctg9_hap1' '1_gl000192_random' 'Un_gl000225'\n '4_gl000194_random' '4_gl000193_random' '9_gl000200_random' 'Un_gl000222'\n 'Un_gl000212' '7_gl000195_random' 'Un_gl000223' 'Un_gl000224'\n 'Un_gl000219' '17_gl000205_random' 'Un_gl000215' 'Un_gl000216'\n 'Un_gl000217' '9_gl000199_random' 'Un_gl000211' 'Un_gl000213'\n 'Un_gl000220' 'Un_gl000218' '19_gl000209_random' 'Un_gl000221'\n 'Un_gl000214' 'Un_gl000228' 'Un_gl000227' '1_gl000191_random'\n '19_gl000208_random' '9_gl000198_random' '17_gl000204_random'\n 'Un_gl000233' 'Un_gl000237' 'Un_gl000230' 'Un_gl000242' 'Un_gl000243'\n 'Un_gl000241' 'Un_gl000236' 'Un_gl000240' '17_gl000206_random'\n 'Un_gl000232' 'Un_gl000234' '11_gl000202_random' 'Un_gl000238'\n 'Un_gl000244' 'Un_gl000248' '8_gl000196_random' 'Un_gl000249'\n 'Un_gl000246' '17_gl000203_random' '8_gl000197_random' 'Un_gl000245'\n 'Un_gl000247' '9_gl000201_random' 'Un_gl000235' 'Un_gl000239'\n '21_gl000210_random' 'Un_gl000231' 'Un_gl000229' 'Un_gl000226'\n '18_gl000207_random']\nprogress: 0.00 elapsed: 0.11 remaining: 353925276.01\n", "command_line": "clodius aggregate bedgraph /tmp/tmp9_WYxw/files/000/dataset_5.dat --assembly grch37  --output-file bedgraph_test.out    --chromosome-col 2  --from-pos-col 3  --to-pos-col 4  --value-col 5  --has-header  --nan-value NA", "exit_code": 0, "state": "ok", "create_time": "2017-11-14T17:20:57.443041", "params": {"chromosome_column": "\"2\"", "to_one_column": "\"\"", "from_position_column": "\"3\"", "nan_value": "\"NA\"", "to_position_column": "\"4\"", "chromosome_one_column": "\"\"", "file_type": "\"bedgraph\"", "from_one_column": "\"\"", "importance_column": "\"\"", "dbkey": "\"hg17\"", "chromosome_two_column": "\"\"", "delimiter": "\"\"", "value_column": "\"5\"", "output_filename": "\"bedgraph_test.out\"", "from_two_column": "\"\"", "to_two_column": "\"\"", "genome_assembly": "\"grch37\"", "has_header": "\"true\"", "chromInfo": "\"/tmp/tmp9_WYxw/galaxy-master/tool-data/shared/ucsc/chrom/hg17.len\"", "max_per_tile": "\"100\""}, "stderr": "", "job_metrics": [], "model_class": "Job", "external_id": "5593", "id": "fa6d20d0fb68383f", "user_email": "test@bx.psu.edu"}}, "id": "functional.test_toolbox.TestForTool_clodius.test_tool_000002", "has_data": true}, {"data": {"status": "success", "inputs": {"file_type": "bigwig", "output_filename": "bigwig_test.out", "input_file": {"src": "hda", "id": "683bc220e21425bb"}}, "job": {"inputs": {"input_file": {"src": "hda", "id": "683bc220e21425bb", "uuid": "396a73ab-b98b-4874-b5df-884448acc7f5"}}, "update_time": "2017-11-14T17:23:04.852968", "tool_id": "clodius", "outputs": {"output_file": {"src": "hda", "id": "a90a30fafe298e1e", "uuid": "aaa87e45-c7b9-4b5e-8f2f-03928fe182de"}}, "stdout": "assembly size (max-length) 3137161265\nmax-width 4294967296.0\nmax_zoom: 22.0\nchunk-size: 16777216\nchrom-order ['chr1' 'chr2' 'chr3' 'chr4' 'chr5' 'chr6' 'chr7' 'chr8' 'chr9' 'chr10'\n 'chr11' 'chr12' 'chr13' 'chr14' 'chr15' 'chr16' 'chr17' 'chr18' 'chr19'\n 'chr20' 'chr21' 'chr22' 'chrX' 'chrY' 'chrM' 'chr6_ssto_hap7'\n 'chr6_mcf_hap5' 'chr6_cox_hap2' 'chr6_mann_hap4' 'chr6_apd_hap1'\n 'chr6_qbl_hap6' 'chr6_dbb_hap3' 'chr17_ctg5_hap1' 'chr4_ctg9_hap1'\n 'chr1_gl000192_random' 'chrUn_gl000225' 'chr4_gl000194_random'\n 'chr4_gl000193_random' 'chr9_gl000200_random' 'chrUn_gl000222'\n 'chrUn_gl000212' 'chr7_gl000195_random' 'chrUn_gl000223' 'chrUn_gl000224'\n 'chrUn_gl000219' 'chr17_gl000205_random' 'chrUn_gl000215' 'chrUn_gl000216'\n 'chrUn_gl000217' 'chr9_gl000199_random' 'chrUn_gl000211' 'chrUn_gl000213'\n 'chrUn_gl000220' 'chrUn_gl000218' 'chr19_gl000209_random' 'chrUn_gl000221'\n 'chrUn_gl000214' 'chrUn_gl000228' 'chrUn_gl000227' 'chr1_gl000191_random'\n 'chr19_gl000208_random' 'chr9_gl000198_random' 'chr17_gl000204_random'\n 'chrUn_gl000233' 'chrUn_gl000237' 'chrUn_gl000230' 'chrUn_gl000242'\n 'chrUn_gl000243' 'chrUn_gl000241' 'chrUn_gl000236' 'chrUn_gl000240'\n 'chr17_gl000206_random' 'chrUn_gl000232' 'chrUn_gl000234'\n 'chr11_gl000202_random' 'chrUn_gl000238' 'chrUn_gl000244' 'chrUn_gl000248'\n 'chr8_gl000196_random' 'chrUn_gl000249' 'chrUn_gl000246'\n 'chr17_gl000203_random' 'chr8_gl000197_random' 'chrUn_gl000245'\n 'chrUn_gl000247' 'chr9_gl000201_random' 'chrUn_gl000235' 'chrUn_gl000239'\n 'chr21_gl000210_random' 'chrUn_gl000231' 'chrUn_gl000229' 'chrUn_gl000226'\n 'chr18_gl000207_random']\nprogress: 0.00 elapsed: 0.00 remaining: 13903782.54\nskipping chrom (not in bigWig file): chr2\nskipping chrom (not in bigWig file): chr3\nskipping chrom (not in bigWig file): chr4\nskipping chrom (not in bigWig file): chr5\nskipping chrom (not in bigWig file): chr6\nskipping chrom (not in bigWig file): chr7\nskipping chrom (not in bigWig file): chr8\nskipping chrom (not in bigWig file): chr9\nskipping chrom (not in bigWig file): chr10\nskipping chrom (not in bigWig file): chr11\nskipping chrom (not in bigWig file): chr12\nskipping chrom (not in bigWig file): chr13\nskipping chrom (not in bigWig file): chr14\nskipping chrom (not in bigWig file): chr15\nskipping chrom (not in bigWig file): chr16\nskipping chrom (not in bigWig file): chr17\nskipping chrom (not in bigWig file): chr18\nskipping chrom (not in bigWig file): chr19\nskipping chrom (not in bigWig file): chr20\nskipping chrom (not in bigWig file): chr21\nskipping chrom (not in bigWig file): chr22\nskipping chrom (not in bigWig file): chrX\nskipping chrom (not in bigWig file): chrY\nskipping chrom (not in bigWig file): chrM\nskipping chrom (not in bigWig file): chr6_ssto_hap7\nskipping chrom (not in bigWig file): chr6_mcf_hap5\nskipping chrom (not in bigWig file): chr6_cox_hap2\nskipping chrom (not in bigWig file): chr6_mann_hap4\nskipping chrom (not in bigWig file): chr6_apd_hap1\nskipping chrom (not in bigWig file): chr6_qbl_hap6\nskipping chrom (not in bigWig file): chr6_dbb_hap3\nskipping chrom (not in bigWig file): chr17_ctg5_hap1\nskipping chrom (not in bigWig file): chr4_ctg9_hap1\nskipping chrom (not in bigWig file): chr1_gl000192_random\nskipping chrom (not in bigWig file): chrUn_gl000225\nskipping chrom (not in bigWig file): chr4_gl000194_random\nskipping chrom (not in bigWig file): chr4_gl000193_random\nskipping chrom (not in bigWig file): chr9_gl000200_random\nskipping chrom (not in bigWig file): chrUn_gl000222\nskipping chrom (not in bigWig file): chrUn_gl000212\nskipping chrom (not in bigWig file): chr7_gl000195_random\nskipping chrom (not in bigWig file): chrUn_gl000223\nskipping chrom (not in bigWig file): chrUn_gl000224\nskipping chrom (not in bigWig file): chrUn_gl000219\nskipping chrom (not in bigWig file): chr17_gl000205_random\nskipping chrom (not in bigWig file): chrUn_gl000215\nskipping chrom (not in bigWig file): chrUn_gl000216\nskipping chrom (not in bigWig file): chrUn_gl000217\nskipping chrom (not in bigWig file): chr9_gl000199_random\nskipping chrom (not in bigWig file): chrUn_gl000211\nskipping chrom (not in bigWig file): chrUn_gl000213\nskipping chrom (not in bigWig file): chrUn_gl000220\nskipping chrom (not in bigWig file): chrUn_gl000218\nskipping chrom (not in bigWig file): chr19_gl000209_random\nskipping chrom (not in bigWig file): chrUn_gl000221\nskipping chrom (not in bigWig file): chrUn_gl000214\nskipping chrom (not in bigWig file): chrUn_gl000228\nskipping chrom (not in bigWig file): chrUn_gl000227\nskipping chrom (not in bigWig file): chr1_gl000191_random\nskipping chrom (not in bigWig file): chr19_gl000208_random\nskipping chrom (not in bigWig file): chr9_gl000198_random\nskipping chrom (not in bigWig file): chr17_gl000204_random\nskipping chrom (not in bigWig file): chrUn_gl000233\nskipping chrom (not in bigWig file): chrUn_gl000237\nskipping chrom (not in bigWig file): chrUn_gl000230\nskipping chrom (not in bigWig file): chrUn_gl000242\nskipping chrom (not in bigWig file): chrUn_gl000243\nskipping chrom (not in bigWig file): chrUn_gl000241\nskipping chrom (not in bigWig file): chrUn_gl000236\nskipping chrom (not in bigWig file): chrUn_gl000240\nskipping chrom (not in bigWig file): chr17_gl000206_random\nskipping chrom (not in bigWig file): chrUn_gl000232\nskipping chrom (not in bigWig file): chrUn_gl000234\nskipping chrom (not in bigWig file): chr11_gl000202_random\nskipping chrom (not in bigWig file): chrUn_gl000238\nskipping chrom (not in bigWig file): chrUn_gl000244\nskipping chrom (not in bigWig file): chrUn_gl000248\nskipping chrom (not in bigWig file): chr8_gl000196_random\nskipping chrom (not in bigWig file): chrUn_gl000249\nskipping chrom (not in bigWig file): chrUn_gl000246\nskipping chrom (not in bigWig file): chr17_gl000203_random\nskipping chrom (not in bigWig file): chr8_gl000197_random\nskipping chrom (not in bigWig file): chrUn_gl000245\nskipping chrom (not in bigWig file): chrUn_gl000247\nskipping chrom (not in bigWig file): chr9_gl000201_random\nskipping chrom (not in bigWig file): chrUn_gl000235\nskipping chrom (not in bigWig file): chrUn_gl000239\nskipping chrom (not in bigWig file): chr21_gl000210_random\nskipping chrom (not in bigWig file): chrUn_gl000231\nskipping chrom (not in bigWig file): chrUn_gl000229\nskipping chrom (not in bigWig file): chrUn_gl000226\nskipping chrom (not in bigWig file): chr18_gl000207_random\n", "command_line": "clodius aggregate bigwig /tmp/tmp9_WYxw/files/000/dataset_7.dat --assembly hg19  --output-file bigwig_test.out", "exit_code": 0, "state": "ok", "create_time": "2017-11-14T17:22:34.453464", "params": {"chromosome_column": "\"\"", "to_one_column": "\"\"", "from_position_column": "\"2\"", "nan_value": "\"\"", "to_position_column": "\"3\"", "chromosome_one_column": "\"\"", "file_type": "\"bigwig\"", "from_one_column": "\"\"", "importance_column": "\"\"", "dbkey": "\"hg17\"", "chromosome_two_column": "\"\"", "delimiter": "\"\"", "value_column": "\"4\"", "output_filename": "\"bigwig_test.out\"", "from_two_column": "\"\"", "to_two_column": "\"\"", "genome_assembly": "\"hg19\"", "has_header": "\"false\"", "chromInfo": "\"/tmp/tmp9_WYxw/galaxy-master/tool-data/shared/ucsc/chrom/hg17.len\"", "max_per_tile": "\"100\""}, "stderr": "", "job_metrics": [], "model_class": "Job", "external_id": "5947", "id": "a90a30fafe298e1e", "user_email": "test@bx.psu.edu"}}, "id": "functional.test_toolbox.TestForTool_clodius.test_tool_000003", "has_data": true}], "version": "0.1", "exit_code": 0, "summary": {"num_skips": 0, "num_errors": 0, "num_failures": 0, "num_tests": 4}};
         renderTestResults(test_data);
       }
     </script>