view MetaRNAseq.xml @ 0:f32198f08f27 draft default tip

Imported from capsule None

<tool id="metarnaseq" name="RNA-seq data meta-analysis">
	<description>perform meta-analysis thanks to metaRNAseq</description>
	<requirements>
	  <container type="docker">sblanck/smat</container>
	</requirements>
	<command>

		/galaxy-tools/stderr_wrapper.py Rscript 
		/galaxy-tools/transcriptomics/MetaRNASeq/MetaRNASeq.R 
		#for $currentInput in $inputList
        	"${currentInput}"
			"${currentInput.name}"	
		 #end for	
			$top_table 
			$diagnostic_html 
			"$diagnostic_html.files_path"
		/galaxy-tools/transcriptomics/MetaRNASeq/MetaRNASeq_tpl.html	
	</command>

	<inputs>
		<param format="tabular" name="inputList" multiple="true" type="data" optional="false" label="Counts file" help="Must have the same number of row in each study. The experimental conditions must be specified in the header of each file"/>

		
	</inputs>

	<outputs>
		<data format="tabular" name="top_table" label="Summary of meta-analysis and single studie analysis from ${tool.name} on ${on_string}"/>
		<data format="html" name="diagnostic_html" label="Charts for ${tool.name} on ${on_string}"/>
	</outputs>

	<help>
		
	</help>

</tool>