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annotate MetaRNAseq.xml @ 12:2da91c541ae4 draft

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date Thu, 11 May 2017 10:55:07 -0400
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1 <tool id="metarnaseq" name="RNA-seq data meta-analysis">
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3 <description>perform meta-analysis thanks to metaRNAseq</description>
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5 <requirements>
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6 <requirement type="package" version="0.1.0">r-smagexp</requirement>
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7 </requirements>
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9 <stdio>
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10 <exit_code range="1:" />
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11 <regex match="Warning" source="both" level="warning"/>
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12 </stdio>
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14 <command interpreter="python">
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15 <![CDATA[
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16 stderr_wrapper.py Rscript
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17 ${__tool_directory__}/MetaRNASeq.R
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18 #for $currentInput in $inputList
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19 "${currentInput}"
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20 "${currentInput.name}"
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21 #end for
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22 $top_table
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23 $diagnostic_html
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24 "$diagnostic_html.files_path"
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25 ${__tool_directory__}/MetaRNASeq_tpl.html
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26 ]]>
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27 </command>
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29 <inputs>
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30 <param format="tabular" name="inputList" multiple="true" type="data" optional="false" label="Counts file" help="Must have the same number of row in each study. The experimental conditions must be specified in the header of each file"/>
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31 </inputs>
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33 <outputs>
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34 <data format="tabular" name="top_table" label="Summary of meta-analysis and single studie analysis from ${tool.name} on ${on_string}"/>
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35 <data format="html" name="diagnostic_html" label="Charts for ${tool.name} on ${on_string}"/>
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36 </outputs>
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38 <help>
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40 </help>
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42 </tool>