Mercurial > repos > sauria > package_h5py_2_5_0
changeset 1:3b17bd6fa3ae draft default tip
planemo upload for repository https://github.com/bxlab/galaxy_tools/testoolshed/packages/package_h5py_2_5_0 commit abaefa638db82abe90f335d783c9503dce28944f-dirty
author | sauria |
---|---|
date | Wed, 03 Jun 2015 14:22:19 -0400 |
parents | cac2248ec1fd |
children | |
files | tool_dependencies.xml |
diffstat | 1 files changed, 7 insertions(+), 10 deletions(-) [+] |
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--- a/tool_dependencies.xml Thu Apr 16 16:17:00 2015 -0400 +++ b/tool_dependencies.xml Wed Jun 03 14:22:19 2015 -0400 @@ -4,43 +4,40 @@ <repository changeset_revision="3412ecd1792d" name="package_hdf5_1_8_12" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="numpy" version="1.7.1"> - <repository name="package_numpy_1_7" owner="iuc" changeset_revision="11099cc214d5" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="bbfe29f56566" name="package_numpy_1_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="cython" version="0.20.1"> - <repository name="package_cython_0_20_1" owner="iuc" changeset_revision="749f11b9358a" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="749f11b9358a" name="package_cython_0_20_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="h5py" version="2.5.0"> <install version="1.0"> <actions> <action type="download_by_url">https://pypi.python.org/packages/source/h/h5py/h5py-2.5.0.tar.gz</action> - <action type="set_environment_for_install"> - <repository changeset_revision="3412ecd1792d" name="package_hdf5_1_8_12" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" > + <repository changeset_revision="3412ecd1792d" name="package_hdf5_1_8_12" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="hdf5" version="1.8.12" /> </repository> - <repository name="package_numpy_1_7" owner="iuc" changeset_revision="11099cc214d5" toolshed="https://testtoolshed.g2.bx.psu.edu" > + <repository changeset_revision="bbfe29f56566" name="package_numpy_1_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="numpy" version="1.7.1" /> </repository> - <repository name="package_cython_0_20_1" owner="iuc" changeset_revision="749f11b9358a" toolshed="https://testtoolshed.g2.bx.psu.edu" > + <repository changeset_revision="749f11b9358a" name="package_cython_0_20_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="cython" version="0.20.1" /> </repository> <environment_variable action="set_to" name="HDF5_DIR">$HDF5_LIBRARY_PATH</environment_variable> </action> - <action type="make_directory">$INSTALL_DIR/lib/python</action> <action type="shell_command"> export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && python setup.py install --install-lib $INSTALL_DIR/lib/python </action> - <action type="set_environment"> <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> <environment_variable action="set_to" name="PYTHONPATH_H5PY">$INSTALL_DIR/lib/python</environment_variable> - </action> + </action> </actions> </install> <readme> Compiling h5py requires cython. </readme> </package> -</tool_dependency> \ No newline at end of file +</tool_dependency>