Mercurial > repos > sauria > hifive
changeset 16:1164d73354cb draft
planemo upload for repository https://github.com/bxlab/galaxy_tools/suites/suite_hifive commit 87e9dfebf772b1403f8b09af1e995d354879f761
| author | sauria |
|---|---|
| date | Fri, 13 Jan 2017 15:44:18 -0500 |
| parents | ac8e910e8553 |
| children | beff3c415f22 |
| files | hifive.xml hifive_macros.xml test-data/hic.raw test-data/temp.fends test-data/temp.hcd test-data/temp.hcp test-data/temp.txt test-data/test.txt test-data/test_fend.bed test-data/test_frag.bed tool_dependencies.xml |
| diffstat | 11 files changed, 667 insertions(+), 22 deletions(-) [+] |
line wrap: on
line diff
--- a/hifive.xml Fri Jan 13 13:47:27 2017 -0500 +++ b/hifive.xml Fri Jan 13 15:44:18 2017 -0500 @@ -408,4 +408,16 @@ @HIC_HELP@ @5C_HELP@ ]]></help> + <citations> + <citation type="bibtex"> + @article{Genome Biology, + author = {Sauria MEG, Phillips-Cremins JE, Corces VG and Taylor J}. + year = {2015}, + title = {HiFive: a tool suite for easy and efficient HiC and 5C data analysis}, + publisher = {BioMed Central}, + journal = {Genome Biology}, + url = {https://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0806-y}, + } + </citation> + </citations> </tool>
--- a/hifive_macros.xml Fri Jan 13 13:47:27 2017 -0500 +++ b/hifive_macros.xml Fri Jan 13 15:44:18 2017 -0500 @@ -3,10 +3,6 @@ <xml name="requirements"> <requirements> <requirement type='package' version="1.3">hifive</requirement> - <requirement type='package' version='0.12'>scipy</requirement> - <requirement type='package' version='0.20.1'>cython</requirement> - <requirement type='package' version='2.5.0'>h5py</requirement> - <requirement type='package' version='1.7.1'>numpy</requirement> <yield/> </requirements> </xml>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hic.raw Fri Jan 13 15:44:18 2017 -0500 @@ -0,0 +1,400 @@ +1 91717 - 1 92513 - +1 92595 - 1 90864 - +1 75210 + 1 83670 - +1 58882 - 1 43714 - +1 46338 + 1 25065 - +1 97866 + 1 59365 - +1 24520 + 1 16117 - +1 43610 - 1 43369 + +1 59192 + 1 39014 - +1 38637 + 1 46359 + +1 59549 - 1 75152 + +1 84113 - 1 97923 + +1 91226 + 1 97613 + +1 32906 - 1 56930 - +1 24729 - 1 24768 - +1 59624 - 1 52546 - +1 43463 + 1 52248 + +1 52466 - 1 43505 + +1 32622 + 1 46591 - +1 39480 - 1 43667 - +1 59046 - 1 97503 + +1 56834 - 1 56601 + +1 59582 - 1 56588 + +1 39382 - 1 32859 - +1 27849 + 1 38368 + +1 16064 - 1 16116 - +1 37787 - 1 15644 + +1 52506 - 1 91347 - +1 92148 + 1 97728 + +1 30323 + 1 16067 - +1 30596 - 1 27727 + +1 91536 + 1 91357 - +1 37437 + 1 38219 + +1 58838 + 1 24960 - +1 52304 + 1 58775 - +1 16150 - 1 39015 - +1 52208 + 1 59004 - +1 43600 + 1 52153 + +1 37740 + 1 58873 + +1 52282 + 1 56868 - +1 83827 - 1 56996 - +1 43572 + 1 91815 - +1 56734 + 1 58986 - +1 24419 + 1 15962 + +1 37754 + 1 38413 - +1 32782 - 1 15594 + +1 39306 - 1 52787 - +1 91755 - 1 59485 - +1 59376 - 1 32362 + +1 38262 + 1 33156 - +1 24459 + 1 39178 + +1 16212 - 1 30825 - +1 90688 + 1 52048 + +1 38693 - 1 30412 + +1 58495 + 1 58788 - +1 30575 - 1 16245 - +1 52885 - 1 75509 - +1 32953 - 1 15987 + +1 92408 + 1 98280 - +1 32294 - 1 15182 + +1 32559 - 1 15891 + +1 52477 - 1 75700 - +1 32947 - 1 52341 + +1 46817 - 1 58714 + +1 46396 + 1 56955 - +1 43393 + 1 38068 + +1 58621 + 1 58661 + +1 39293 - 1 39062 + +1 58636 + 1 32012 + +1 43694 - 1 58923 - +1 43679 - 1 32914 - +1 30289 + 1 16114 - +1 75601 - 1 38425 - +1 31900 + 1 38635 + +1 97960 - 1 91507 + +1 91141 + 1 97592 + +1 38350 + 1 39023 - +1 91566 + 1 56902 - +1 58438 + 1 32251 - +1 32801 - 1 16028 - +1 39328 - 1 39192 + +1 43709 - 1 38423 - +1 91140 + 1 58947 + +1 52671 - 1 30244 + +1 56665 + 1 59438 - +1 75427 - 1 43448 + +1 32678 + 1 46536 - +1 91011 - 1 98049 - +1 83475 - 1 31941 + +1 27680 + 1 39684 - +1 37667 + 1 84020 + +1 58786 - 1 32527 - +1 38648 + 1 16143 - +1 91426 - 1 83300 + +1 38533 - 1 58691 + +1 16376 - 1 39144 + +1 43473 + 1 52657 - +1 97994 - 1 58991 - +1 84027 + 1 46387 + +1 92607 - 1 75278 + +1 83863 + 1 84216 - +1 91515 + 1 91264 + +1 38846 - 1 38520 - +1 56942 - 1 58928 + +1 97708 + 1 98103 - +1 58403 + 1 91816 - +1 97860 + 1 90903 - +1 58851 + 1 56663 + +1 84053 - 1 83217 + +1 56761 + 1 46118 + +1 39323 - 1 52316 + +1 39151 + 1 37532 + +1 98415 - 1 91079 - +1 38830 - 1 32632 + +1 38400 - 1 43956 - +1 84415 - 1 98286 - +1 91484 - 1 97877 + +1 56743 + 1 46750 - +1 83909 - 1 97920 + +1 27492 + 1 15672 + +1 32841 - 1 24555 + +1 92556 - 1 98120 - +1 75260 + 1 90692 + +1 59369 - 1 46633 - +1 58954 - 1 59086 - +1 38066 + 1 24442 + +1 37889 - 1 38600 - +1 52488 - 1 97730 + +1 28004 - 1 30399 + +1 58878 - 1 59694 - +1 56857 - 1 32605 - +1 46649 - 1 59591 - +1 30208 + 1 15922 + +1 24854 - 1 24771 - +1 15598 + 1 24699 - +1 58754 - 1 58573 + +1 90718 + 1 56881 - +1 83924 - 1 58658 + +1 56815 + 1 58865 - +1 38618 - 1 16203 - +1 32538 + 1 46569 - +1 38035 + 1 52397 + +1 84139 - 1 98083 - +1 90972 + 1 97956 - +1 28369 - 1 15689 + +1 83652 - 1 58810 + +1 75449 - 1 43459 + +1 46345 + 1 32416 - +1 38036 - 1 32648 + +1 59226 + 1 52321 + +1 39242 + 1 59502 - +1 28175 - 1 38624 + +1 32934 - 1 32802 - +1 98145 - 1 97893 + +1 38415 - 1 56913 - +1 58884 - 1 52465 - +1 97900 + 1 83054 + +1 91581 + 1 97834 + +1 37577 + 1 58573 + +1 30574 - 1 32822 - +1 59021 - 1 38712 + +1 38826 - 1 58671 + +1 38345 + 1 32068 + +1 38453 + 1 24441 + +1 58861 - 1 56507 + +1 52456 - 1 58376 + +1 38846 - 1 32200 - +1 90680 + 1 83401 - +1 37569 + 1 32087 + +1 32033 + 1 57027 - +1 83668 - 1 59244 + +1 52216 + 1 57021 - +1 46436 + 1 32410 - +1 91704 - 1 58372 + +1 83427 - 1 59120 - +1 90464 + 1 82932 + +1 38520 - 1 31963 + +1 15663 + 1 38357 + +1 59537 - 1 75326 + +1 32288 - 1 38150 + +1 32464 - 1 24885 - +1 43628 - 1 56566 + +1 37813 - 1 37866 - +1 91483 + 1 91946 - +1 38423 - 1 57056 - +1 15922 + 1 30575 - +1 38970 + 1 52109 + +1 58870 - 1 91077 - +1 91547 + 1 97789 + +1 39313 - 1 32156 + +1 46419 + 1 56839 - +1 83957 + 1 74862 + +1 90826 - 1 98128 - +1 30310 + 1 15941 + +1 56879 - 1 52299 + +1 57016 - 1 38311 + +1 52061 + 1 46509 - +1 90119 + 1 39309 - +1 37411 + 1 30527 - +1 24379 + 1 38236 + +2 57382 + 2 24928 + +2 51580 + 2 55420 - +2 28171 - 2 40213 + +2 16228 - 2 15345 - +2 92899 + 2 93221 - +2 18245 - 2 17814 + +2 57749 + 2 55061 + +2 85233 + 2 97048 - +2 63023 - 2 58302 + +2 57757 + 2 65309 - +2 16159 - 2 36436 - +2 74621 + 2 95348 - +2 52444 + 2 74613 + +2 40312 + 2 62741 + +2 16249 - 2 15199 + +2 85824 - 2 96987 + +2 39303 - 2 62598 + +2 52728 - 2 15561 - +2 39048 + 2 16329 - +2 16053 - 2 28091 - +2 63343 - 2 57546 + +2 28113 - 2 39798 - +2 38798 + 2 15246 + +2 36076 + 2 36399 - +2 58658 - 2 58430 - +2 17993 + 2 15430 - +2 27873 + 2 15366 - +2 15429 - 2 17950 + +2 63730 - 2 97407 - +2 28087 + 2 28122 + +2 64987 + 2 74480 + +2 62947 - 2 97057 - +2 40355 + 2 27880 + +2 57848 - 2 51590 + +2 74540 + 2 93083 - +2 95322 - 2 95280 - +2 36323 + 2 15680 + +2 64870 + 2 65396 - +2 74439 + 2 74958 - +2 63467 + 2 97100 - +2 95308 - 2 93358 - +2 97000 + 2 97319 - +2 52681 - 2 51528 + +2 85255 + 2 96875 + +2 72050 - 2 28326 - +2 55433 - 2 52586 + +2 71736 + 2 63016 - +2 92993 + 2 58537 - +2 24961 + 2 28400 - +2 51434 + 2 39747 + +2 16079 - 2 35975 + +2 55189 + 2 51284 + +2 55535 - 2 62724 + +2 39124 + 2 15923 + +2 58237 + 2 63344 - +2 24730 + 2 58250 + +2 39721 + 2 57612 + +2 51530 + 2 15288 + +2 36546 - 2 15356 - +2 55475 - 2 62677 + +2 18370 - 2 40242 + +2 63281 - 2 74576 + +2 27955 + 2 15252 + +2 97088 - 2 97059 - +2 40197 + 2 57328 + +2 71702 + 2 63724 + +2 58244 + 2 51579 + +2 38738 + 2 39898 - +2 93149 - 2 97093 - +2 93196 - 2 96980 + +2 95294 - 2 85150 + +2 40561 - 2 36653 - +2 71855 - 2 58210 + +2 51676 - 2 57486 + +2 55463 - 2 51593 - +2 71684 + 2 65053 + +2 24937 + 2 15574 - +2 63058 - 2 16248 - +2 55033 + 2 51460 + +2 16090 - 2 27899 + +2 51562 + 2 15262 + +2 65125 - 2 97230 - +2 96963 + 2 96918 + +2 18020 + 2 28244 - +2 52904 - 2 51882 - +2 52494 + 2 18299 - +2 94970 + 2 93289 - +2 24713 + 2 14854 + +2 39522 - 2 15412 - +2 51477 + 2 18347 - +2 40371 + 2 38947 + +2 15186 + 2 15332 - +2 27983 + 2 51895 - +2 40437 - 2 51673 - +2 27932 + 2 15161 + +2 24964 + 2 18396 - +2 74343 + 2 85551 - +2 74770 - 2 72043 - +2 36384 - 2 52404 + +2 63625 + 2 63002 - +2 63546 + 2 74745 - +2 40331 + 2 15122 + +2 95306 - 2 52525 + +2 93241 - 2 96837 + +2 52988 - 2 40531 - +2 96885 + 2 95532 - +2 25068 - 2 15574 - +2 15261 + 2 15141 + +2 28355 - 2 36244 + +2 65288 - 2 65026 + +2 58467 - 2 28350 - +2 36919 - 2 40557 - +2 74874 - 2 58354 + +2 16106 - 2 27817 + +2 36404 - 2 51527 + +2 64689 + 2 96510 + +2 65103 - 2 96893 + +2 65432 - 2 58432 - +2 18692 - 2 28207 - +2 39817 - 2 24942 + +2 16380 - 2 15440 - +2 36003 + 2 40494 - +2 15992 + 2 15974 + +2 95218 - 2 97273 - +2 16065 - 2 15341 - +2 51493 + 2 40477 - +2 39349 - 2 39442 - +2 25039 - 2 15979 + +2 15165 + 2 15338 - +2 55274 + 2 39224 - +2 55304 - 2 39499 + +2 55202 + 2 85080 + +2 57262 + 2 40413 + +2 39701 + 2 52810 - +2 39545 + 2 28118 - +2 55098 + 2 28178 + +2 15113 + 2 15422 - +2 24868 + 2 15468 - +2 51672 - 2 17809 + +2 51659 - 2 40284 + +2 96912 + 2 96954 + +2 93324 - 2 58489 - +2 95086 + 2 96867 + +2 39125 + 2 57738 + +2 55399 - 2 51387 + +2 55463 - 2 51902 - +2 85626 - 2 96854 + +2 17813 + 2 16090 - +2 24853 + 2 15221 + +2 28259 - 2 16009 + +2 74508 + 2 57381 + +2 28102 - 2 15412 - +2 39351 + 2 18176 - +2 63631 + 2 51298 + +2 52614 - 2 52930 - +2 24585 + 2 18511 - +2 57910 - 2 40619 - +2 64941 + 2 55647 - +2 57581 + 2 51588 + +2 27934 + 2 63638 + +2 52185 + 2 40678 - +2 52750 - 2 51473 + +2 40300 + 2 55279 + +2 63580 + 2 97107 - +2 15997 + 2 15413 - +2 85305 + 2 97317 - +2 27897 + 2 15169 + +2 71955 - 2 74751 - +2 64904 + 2 63036 - +2 18077 + 2 15214 + +2 62910 + 2 55378 - +2 15086 + 2 51720 - +2 95105 + 2 97464 - +2 39372 - 2 28314 - +2 97602 - 2 97018 + +2 63729 - 2 57735 + +2 39432 - 2 28280 - +2 28030 + 2 15506 - +2 51745 - 2 64914 + +2 52644 - 2 65117 - +2 28422 - 2 15874 + +2 17696 + 2 18328 - +2 28130 + 2 28307 - +2 58109 + 2 40548 - +2 74330 + 2 74791 - +2 62861 + 2 62813 + +2 74734 - 2 64831 + +2 15599 - 2 15056 + +2 51207 + 2 38915 + +2 24873 + 2 51592 - +2 51795 - 2 52607 + +2 52662 - 2 97104 - +2 58549 - 2 52019 - +2 36186 + 2 51480 + +2 96604 + 2 97009 + +2 93122 - 2 85622 - +2 28433 - 2 58575 - +2 39123 + 2 18159 - +2 57947 - 2 54997 + +2 92713 + 2 57985 -
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/temp.txt Fri Jan 13 15:44:18 2017 -0500 @@ -0,0 +1,1 @@ +chr1 20000 30000 chr1 30000 40000 0.303682
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test.txt Fri Jan 13 15:44:18 2017 -0500 @@ -0,0 +1,2 @@ +hifive hic-complete express --bed test_fend.bed -R hic.raw -i 600 -f 3 -j 1000 -n 10 -d -P temp +hifive hic-interval -c 1 -s 20000 -e 40000 -b 10000 -d enrichment temp.hcp temp.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_fend.bed Fri Jan 13 15:44:18 2017 -0500 @@ -0,0 +1,50 @@ +chr1 16007 16013 HindIII 0 . +chr1 24571 24577 HindIII 0 . +chr1 27981 27987 HindIII 0 . +chr1 30429 30435 HindIII 0 . +chr1 32153 32159 HindIII 0 . +chr1 32774 32780 HindIII 0 . +chr1 37752 37758 HindIII 0 . +chr1 38369 38375 HindIII 0 . +chr1 38791 38797 HindIII 0 . +chr1 39255 39261 HindIII 0 . +chr1 43602 43608 HindIII 0 . +chr1 46455 46461 HindIII 0 . +chr1 52419 52425 HindIII 0 . +chr1 56815 56821 HindIII 0 . +chr1 58747 58753 HindIII 0 . +chr1 58954 58960 HindIII 0 . +chr1 59356 59362 HindIII 0 . +chr1 75365 75371 HindIII 0 . +chr1 83359 83365 HindIII 0 . +chr1 84049 84055 HindIII 0 . +chr1 90742 90748 HindIII 0 . +chr1 91319 91325 HindIII 0 . +chr1 91586 91592 HindIII 0 . +chr1 92457 92463 HindIII 0 . +chr1 97923 97929 HindIII 0 . +chr2 15298 15304 HindIII 0 . +chr2 16049 16055 HindIII 0 . +chr2 18132 18138 HindIII 0 . +chr2 24992 24998 HindIII 0 . +chr2 28070 28076 HindIII 0 . +chr2 28179 28185 HindIII 0 . +chr2 36363 36369 HindIII 0 . +chr2 39160 39166 HindIII 0 . +chr2 39794 39800 HindIII 0 . +chr2 40429 40435 HindIII 0 . +chr2 51587 51593 HindIII 0 . +chr2 51663 51669 HindIII 0 . +chr2 52608 52614 HindIII 0 . +chr2 55288 55294 HindIII 0 . +chr2 57768 57774 HindIII 0 . +chr2 58355 58361 HindIII 0 . +chr2 62941 62947 HindIII 0 . +chr2 63723 63729 HindIII 0 . +chr2 65095 65101 HindIII 0 . +chr2 71813 71819 HindIII 0 . +chr2 74696 74702 HindIII 0 . +chr2 85327 85333 HindIII 0 . +chr2 93076 93082 HindIII 0 . +chr2 95210 95216 HindIII 0 . +chr2 97029 97035 HindIII 0 .
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_frag.bed Fri Jan 13 15:44:18 2017 -0500 @@ -0,0 +1,202 @@ +chr1 16010 24574 Primer_00_For 0 + +chr1 24574 27984 Primer_01_Rev 0 - +chr1 27984 30432 Primer_02_For 0 + +chr1 30432 32156 Primer_03_Rev 0 - +chr1 32156 32777 Primer_04_For 0 + +chr1 32777 37755 Primer_05_Rev 0 - +chr1 37755 38372 Primer_06_For 0 + +chr1 38372 38794 Primer_07_Rev 0 - +chr1 38794 39258 Primer_08_For 0 + +chr1 39258 43605 Primer_09_Rev 0 - +chr1 43605 46458 Primer_10_For 0 + +chr1 46458 52422 Primer_11_Rev 0 - +chr1 52422 56818 Primer_12_For 0 + +chr1 56818 58750 Primer_13_Rev 0 - +chr1 58750 58957 Primer_14_For 0 + +chr1 58957 59359 Primer_15_Rev 0 - +chr1 59359 75368 Primer_16_For 0 + +chr1 75368 83362 Primer_17_Rev 0 - +chr1 83362 84052 Primer_18_For 0 + +chr1 84052 90745 Primer_19_Rev 0 - +chr1 90745 91322 Primer_20_For 0 + +chr1 91322 91589 Primer_21_Rev 0 - +chr1 91589 92460 Primer_22_For 0 + +chr1 92460 97926 Primer_23_Rev 0 - +chr1 97926 101019 Primer_24_For 0 + +chr1 101019 102675 Primer_25_Rev 0 - +chr1 102675 105560 Primer_26_For 0 + +chr1 105560 106653 Primer_27_Rev 0 - +chr1 106653 107961 Primer_28_For 0 + +chr1 107961 108199 Primer_29_Rev 0 - +chr1 108199 109520 Primer_30_For 0 + +chr1 109520 114996 Primer_31_Rev 0 - +chr1 114996 115430 Primer_32_For 0 + +chr1 115430 116794 Primer_33_Rev 0 - +chr1 116794 117062 Primer_34_For 0 + +chr1 117062 118302 Primer_35_Rev 0 - +chr1 118302 121958 Primer_36_For 0 + +chr1 121958 124939 Primer_37_Rev 0 - +chr1 124939 130395 Primer_38_For 0 + +chr1 130395 130462 Primer_39_Rev 0 - +chr1 130462 139819 Primer_40_For 0 + +chr1 139819 140043 Primer_41_Rev 0 - +chr1 140043 142853 Primer_42_For 0 + +chr1 142853 155675 Primer_43_Rev 0 - +chr1 155675 157488 Primer_44_For 0 + +chr1 157488 157623 Primer_45_Rev 0 - +chr1 157623 159127 Primer_46_For 0 + +chr1 159127 159862 Primer_47_Rev 0 - +chr1 159862 161091 Primer_48_For 0 + +chr1 161091 173282 Primer_49_Rev 0 - +chr1 173282 174260 Primer_50_For 0 + +chr1 174260 175546 Primer_51_Rev 0 - +chr1 175546 228207 Primer_52_For 0 + +chr1 228207 228568 Primer_53_Rev 0 - +chr1 228568 231797 Primer_54_For 0 + +chr1 231797 237073 Primer_55_Rev 0 - +chr1 237073 237652 Primer_56_For 0 + +chr1 237652 237915 Primer_57_Rev 0 - +chr1 237915 238787 Primer_58_For 0 + +chr1 238787 244261 Primer_59_Rev 0 - +chr1 244261 247336 Primer_60_For 0 + +chr1 247336 248991 Primer_61_Rev 0 - +chr1 248991 251875 Primer_62_For 0 + +chr1 251875 252968 Primer_63_Rev 0 - +chr1 252968 254276 Primer_64_For 0 + +chr1 254276 254514 Primer_65_Rev 0 - +chr1 254514 255841 Primer_66_For 0 + +chr1 255841 261311 Primer_67_Rev 0 - +chr1 261311 261745 Primer_68_For 0 + +chr1 261745 263111 Primer_69_Rev 0 - +chr1 263111 263379 Primer_70_For 0 + +chr1 263379 264619 Primer_71_Rev 0 - +chr1 264619 317876 Primer_72_For 0 + +chr1 317876 320686 Primer_73_Rev 0 - +chr1 320686 320910 Primer_74_For 0 + +chr1 320910 324093 Primer_75_Rev 0 - +chr1 324093 324317 Primer_76_For 0 + +chr1 324317 332889 Primer_77_Rev 0 - +chr1 332889 332956 Primer_78_For 0 + +chr1 332956 338410 Primer_79_Rev 0 - +chr1 338410 341367 Primer_80_For 0 + +chr1 341367 345029 Primer_81_Rev 0 - +chr1 345029 346269 Primer_82_For 0 + +chr1 346269 346537 Primer_83_Rev 0 - +chr1 346537 347902 Primer_84_For 0 + +chr1 347902 348336 Primer_85_Rev 0 - +chr1 348336 352886 Primer_86_For 0 + +chr1 352886 354735 Primer_87_Rev 0 - +chr1 354735 355945 Primer_88_For 0 + +chr1 355945 369333 Primer_89_Rev 0 - +chr1 369333 370804 Primer_90_For 0 + +chr1 370804 371769 Primer_91_Rev 0 - +chr1 371769 374307 Primer_92_For 0 + +chr1 374307 376188 Primer_93_Rev 0 - +chr1 376188 378553 Primer_94_For 0 + +chr1 378553 382213 Primer_95_Rev 0 - +chr1 382213 390650 Primer_96_For 0 + +chr1 390650 395284 Primer_97_Rev 0 - +chr1 395284 396271 Primer_98_For 0 + +chr1 396271 401276 Primer_99_Rev 0 - +chr2 16010 16052 Primer_100_For 0 + +chr2 24574 18135 Primer_101_Rev 0 - +chr2 27984 24995 Primer_102_For 0 + +chr2 30432 28073 Primer_103_Rev 0 - +chr2 32156 28182 Primer_104_For 0 + +chr2 32777 36366 Primer_105_Rev 0 - +chr2 37755 39163 Primer_106_For 0 + +chr2 38372 39797 Primer_107_Rev 0 - +chr2 38794 40432 Primer_108_For 0 + +chr2 39258 51590 Primer_109_Rev 0 - +chr2 43605 51666 Primer_110_For 0 + +chr2 46458 52611 Primer_111_Rev 0 - +chr2 52422 55291 Primer_112_For 0 + +chr2 56818 57771 Primer_113_Rev 0 - +chr2 58750 58358 Primer_114_For 0 + +chr2 58957 62944 Primer_115_Rev 0 - +chr2 59359 63726 Primer_116_For 0 + +chr2 75368 65098 Primer_117_Rev 0 - +chr2 83362 71816 Primer_118_For 0 + +chr2 84052 74699 Primer_119_Rev 0 - +chr2 90745 85330 Primer_120_For 0 + +chr2 91322 93079 Primer_121_Rev 0 - +chr2 91589 95213 Primer_122_For 0 + +chr2 92460 97032 Primer_123_Rev 0 - +chr2 97926 109082 Primer_124_For 0 + +chr2 101019 111682 Primer_125_Rev 0 - +chr2 102675 111896 Primer_126_For 0 + +chr2 105560 112076 Primer_127_Rev 0 - +chr2 106653 113602 Primer_128_For 0 + +chr2 107961 116730 Primer_129_Rev 0 - +chr2 108199 118064 Primer_130_For 0 + +chr2 109520 118670 Primer_131_Rev 0 - +chr2 114996 120123 Primer_132_For 0 + +chr2 115430 124293 Primer_133_Rev 0 - +chr2 116794 130563 Primer_134_For 0 + +chr2 117062 130766 Primer_135_Rev 0 - +chr2 118302 135969 Primer_136_For 0 + +chr2 121958 137384 Primer_137_Rev 0 - +chr2 124939 137513 Primer_138_For 0 + +chr2 130395 138953 Primer_139_Rev 0 - +chr2 130462 139055 Primer_140_For 0 + +chr2 139819 143191 Primer_141_Rev 0 - +chr2 140043 150160 Primer_142_For 0 + +chr2 142853 151998 Primer_143_Rev 0 - +chr2 155675 152598 Primer_144_For 0 + +chr2 157488 155847 Primer_145_Rev 0 - +chr2 157623 158493 Primer_146_For 0 + +chr2 159127 163026 Primer_147_Rev 0 - +chr2 159862 164088 Primer_148_For 0 + +chr2 161091 165947 Primer_149_Rev 0 - +chr2 173282 168787 Primer_150_For 0 + +chr2 174260 173095 Primer_151_Rev 0 - +chr2 175546 173128 Primer_152_For 0 + +chr2 228207 175550 Primer_153_Rev 0 - +chr2 228568 176745 Primer_154_For 0 + +chr2 231797 183924 Primer_155_Rev 0 - +chr2 237073 185645 Primer_156_For 0 + +chr2 237652 186944 Primer_157_Rev 0 - +chr2 237915 188303 Primer_158_For 0 + +chr2 238787 188400 Primer_159_Rev 0 - +chr2 244261 188957 Primer_160_For 0 + +chr2 247336 192256 Primer_161_Rev 0 - +chr2 248991 193266 Primer_162_For 0 + +chr2 251875 194546 Primer_163_Rev 0 - +chr2 252968 196809 Primer_164_For 0 + +chr2 254276 199072 Primer_165_Rev 0 - +chr2 254514 199559 Primer_166_For 0 + +chr2 255841 203683 Primer_167_Rev 0 - +chr2 261311 211898 Primer_168_For 0 + +chr2 261745 212927 Primer_169_Rev 0 - +chr2 263111 221159 Primer_170_For 0 + +chr2 263379 222594 Primer_171_Rev 0 - +chr2 264619 224468 Primer_172_For 0 + +chr2 317876 233839 Primer_173_Rev 0 - +chr2 320686 233884 Primer_174_For 0 + +chr2 320910 234227 Primer_175_Rev 0 - +chr2 324093 238333 Primer_176_For 0 + +chr2 324317 239004 Primer_177_Rev 0 - +chr2 332889 239505 Primer_178_For 0 + +chr2 332956 240406 Primer_179_Rev 0 - +chr2 338410 246696 Primer_180_For 0 + +chr2 341367 250702 Primer_181_Rev 0 - +chr2 345029 254585 Primer_182_For 0 + +chr2 346269 258819 Primer_183_Rev 0 - +chr2 346537 261894 Primer_184_For 0 + +chr2 347902 262250 Primer_185_Rev 0 - +chr2 348336 262408 Primer_186_For 0 + +chr2 352886 274458 Primer_187_Rev 0 - +chr2 354735 281363 Primer_188_For 0 + +chr2 355945 283106 Primer_189_Rev 0 - +chr2 369333 287295 Primer_190_For 0 + +chr2 370804 291827 Primer_191_Rev 0 - +chr2 371769 296242 Primer_192_For 0 + +chr2 374307 301841 Primer_193_Rev 0 - +chr2 376188 302409 Primer_194_For 0 + +chr2 378553 311206 Primer_195_Rev 0 - +chr2 382213 315861 Primer_196_For 0 + +chr2 390650 318418 Primer_197_Rev 0 - +chr2 395284 324520 Primer_198_For 0 + +chr2 396271 327297 Primer_199_Rev 0 - +chr3 16010 63687 Primer_200_For 0 + +chr3 24574 64310 Primer_201_Rev 0 - \ No newline at end of file
--- a/tool_dependencies.xml Fri Jan 13 13:47:27 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,18 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="scipy" version="0.12.0"> - <repository changeset_revision="63808602082c" name="package_scipy_0_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> - <package name="numpy" version="1.7.1"> - <repository changeset_revision="5c489d2d630b" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> - <package name="cython" version="0.20.1"> - <repository changeset_revision="749f11b9358a" name="package_cython_0_20_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> - <package name="h5py" version="2.5.0"> - <repository changeset_revision="3b17bd6fa3ae" name="package_h5py_2_5_0" owner="sauria" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> - <package name="hifive" version="1.3"> - <repository changeset_revision="b527d80af108" name="package_hifive_1_3" owner="sauria" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> -</tool_dependency>