Mercurial > repos > saskia-hiltemann > mothur_align_check

changeset 1:7933347d5b4a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
author saskia-hiltemann
date Mon, 06 Jun 2016 09:57:31 -0400
parents 48b3a755bd02
children fb85f0b4bdfa
files tool_dependencies.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Jun 06 09:53:52 2016 -0400
+++ b/tool_dependencies.xml	Mon Jun 06 09:57:31 2016 -0400
@@ -7,15 +7,15 @@
         <install version="1.0">
             <actions>
                 <action type="download_by_url">https://github.com/mothur/mothur/archive/v1.36.1.zip</action>
-                <action type="shell_command">chmod u+x Mothur.source/uchime_src/mk</action>
+                <action type="shell_command">chmod u+x source/uchime_src/mk</action>
                 <action type="shell_command">
                     test $(uname) = Linux &amp;&amp;
                     perl -i.bak -pe 's/(USEREADLINE.+) = yes/$1 = no/; s/TARGET_ARCH \+= -arch x86_64//; s/#(CXXFLAGS.+-mtune=native -march=native -m64)/$1/;' Mothur.source/makefile ||
                     true
                 </action>
-                <action type="shell_command">cd Mothur.source; make -j 2;</action>
+                <action type="shell_command">cd source; make -j 2;</action>
                 <action type="move_file">
-                    <source>Mothur.source/mothur</source>
+                    <source>source/mothur</source>
                     <destination>$INSTALL_DIR/bin</destination>
                 </action>
                 <action type="move_file">