Mercurial > repos > saskia-hiltemann > annovar

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added support for LJB2, COSMIC67, CLINVAR, NCI60 annotations. Fixed DGV annotation, now uses new UCSC file named dgvMerged
author saskia-hiltemann
date Mon, 18 Nov 2013 10:43:57 -0500
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<?xml version="1.0"?>
<tool_dependency>
	<package name="cgatools17" version="1"> 
        <install version="1.0">
            <actions>                				
                <action type="download_by_url">http://sourceforge.net/projects/cgatools/files/1.7.1/cgatools-1.7.1.5-linux_binary-x86_64.tar.gz</action>
				<action type="shell_command"> chmod a+x bin/cgatools</action>
                <action type="move_file">
                	<source>bin/cgatools</source>
                	<destination>$INSTALL_DIR/bin</destination>
                </action>	    
				<action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable>
                </action>            	               			
            </actions>
        </install>
        <readme>
			Downloads and installs the cgatools binary. 
        </readme>
    </package>      
</tool_dependency>