Mercurial > repos > sanbi-uwc > vcf_to_alignment

annotate pyqver2.py @ 2:a0c85f2d74a5 draft

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planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
author sanbi-uwc
date Wed, 01 Feb 2017 08:45:12 -0500
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2
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
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1 #!/usr/bin/env python
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
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2
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3 import compiler
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4 import platform
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5 import sys
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6
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7 StandardModules = {
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8 "__future__": (2, 1),
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9 "abc": (2, 6),
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10 "argparse": (2, 7),
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11 "ast": (2, 6),
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12 "atexit": (2, 0),
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13 "bz2": (2, 3),
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14 "cgitb": (2, 2),
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15 "collections": (2, 4),
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16 "contextlib": (2, 5),
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17 "cookielib": (2, 4),
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18 "cProfile": (2, 5),
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19 "csv": (2, 3),
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20 "ctypes": (2, 5),
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21 "datetime": (2, 3),
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22 "decimal": (2, 4),
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23 "difflib": (2, 1),
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24 "DocXMLRPCServer": (2, 3),
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25 "dummy_thread": (2, 3),
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26 "dummy_threading": (2, 3),
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27 "email": (2, 2),
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28 "fractions": (2, 6),
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29 "functools": (2, 5),
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30 "future_builtins": (2, 6),
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31 "hashlib": (2, 5),
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32 "heapq": (2, 3),
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33 "hmac": (2, 2),
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34 "hotshot": (2, 2),
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35 "HTMLParser": (2, 2),
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36 "importlib": (2, 7),
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37 "inspect": (2, 1),
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38 "io": (2, 6),
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39 "itertools": (2, 3),
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40 "json": (2, 6),
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41 "logging": (2, 3),
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42 "modulefinder": (2, 3),
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43 "msilib": (2, 5),
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44 "multiprocessing": (2, 6),
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45 "netrc": (1, 5, 2),
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46 "numbers": (2, 6),
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47 "optparse": (2, 3),
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48 "ossaudiodev": (2, 3),
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49 "pickletools": (2, 3),
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50 "pkgutil": (2, 3),
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51 "platform": (2, 3),
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52 "pydoc": (2, 1),
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53 "runpy": (2, 5),
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54 "sets": (2, 3),
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55 "shlex": (1, 5, 2),
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56 "SimpleXMLRPCServer": (2, 2),
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57 "spwd": (2, 5),
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58 "sqlite3": (2, 5),
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59 "ssl": (2, 6),
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60 "stringprep": (2, 3),
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61 "subprocess": (2, 4),
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62 "sysconfig": (2, 7),
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63 "tarfile": (2, 3),
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64 "textwrap": (2, 3),
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65 "timeit": (2, 3),
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66 "unittest": (2, 1),
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67 "uuid": (2, 5),
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68 "warnings": (2, 1),
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69 "weakref": (2, 1),
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70 "winsound": (1, 5, 2),
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71 "wsgiref": (2, 5),
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72 "xml.dom": (2, 0),
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73 "xml.dom.minidom": (2, 0),
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74 "xml.dom.pulldom": (2, 0),
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75 "xml.etree.ElementTree": (2, 5),
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76 "xml.parsers.expat":(2, 0),
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77 "xml.sax": (2, 0),
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78 "xml.sax.handler": (2, 0),
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79 "xml.sax.saxutils": (2, 0),
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80 "xml.sax.xmlreader":(2, 0),
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81 "xmlrpclib": (2, 2),
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82 "zipfile": (1, 6),
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83 "zipimport": (2, 3),
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84 "_ast": (2, 5),
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85 "_winreg": (2, 0),
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86 }
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87
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88 Functions = {
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89 "all": (2, 5),
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90 "any": (2, 5),
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91 "collections.Counter": (2, 7),
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92 "collections.defaultdict": (2, 5),
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93 "collections.OrderedDict": (2, 7),
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94 "enumerate": (2, 3),
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95 "frozenset": (2, 4),
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96 "itertools.compress": (2, 7),
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97 "math.erf": (2, 7),
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98 "math.erfc": (2, 7),
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99 "math.expm1": (2, 7),
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100 "math.gamma": (2, 7),
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101 "math.lgamma": (2, 7),
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102 "memoryview": (2, 7),
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103 "next": (2, 6),
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104 "os.getresgid": (2, 7),
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105 "os.getresuid": (2, 7),
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106 "os.initgroups": (2, 7),
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107 "os.setresgid": (2, 7),
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108 "os.setresuid": (2, 7),
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109 "reversed": (2, 4),
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110 "set": (2, 4),
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111 "subprocess.check_call": (2, 5),
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112 "subprocess.check_output": (2, 7),
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113 "sum": (2, 3),
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114 "symtable.is_declared_global": (2, 7),
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115 "weakref.WeakSet": (2, 7),
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116 }
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117
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118 Identifiers = {
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119 "False": (2, 2),
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120 "True": (2, 2),
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121 }
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122
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123 def uniq(a):
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124 if len(a) == 0:
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125 return []
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126 else:
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127 return [a[0]] + uniq([x for x in a if x != a[0]])
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128
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129 class NodeChecker(object):
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130 def __init__(self):
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131 self.vers = dict()
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132 self.vers[(2,0)] = []
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133 def add(self, node, ver, msg):
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134 if ver not in self.vers:
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135 self.vers[ver] = []
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136 self.vers[ver].append((node.lineno, msg))
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137 def default(self, node):
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138 for child in node.getChildNodes():
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139 self.visit(child)
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140 def visitCallFunc(self, node):
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141 def rollup(n):
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142 if isinstance(n, compiler.ast.Name):
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143 return n.name
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144 elif isinstance(n, compiler.ast.Getattr):
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145 r = rollup(n.expr)
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146 if r:
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147 return r + "." + n.attrname
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148 name = rollup(node.node)
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149 if name:
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150 v = Functions.get(name)
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151 if v is not None:
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152 self.add(node, v, name)
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153 self.default(node)
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154 def visitClass(self, node):
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155 if node.bases:
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156 self.add(node, (2,2), "new-style class")
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157 if node.decorators:
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158 self.add(node, (2,6), "class decorator")
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159 self.default(node)
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160 def visitDictComp(self, node):
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161 self.add(node, (2,7), "dictionary comprehension")
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162 self.default(node)
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163 def visitFloorDiv(self, node):
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164 self.add(node, (2,2), "// operator")
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165 self.default(node)
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166 def visitFrom(self, node):
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167 v = StandardModules.get(node.modname)
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168 if v is not None:
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169 self.add(node, v, node.modname)
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170 for n in node.names:
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171 name = node.modname + "." + n[0]
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172 v = Functions.get(name)
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173 if v is not None:
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174 self.add(node, v, name)
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175 def visitFunction(self, node):
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176 if node.decorators:
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177 self.add(node, (2,4), "function decorator")
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178 self.default(node)
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179 def visitGenExpr(self, node):
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180 self.add(node, (2,4), "generator expression")
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181 self.default(node)
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182 def visitGetattr(self, node):
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183 if (isinstance(node.expr, compiler.ast.Const)
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184 and isinstance(node.expr.value, str)
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185 and node.attrname == "format"):
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186 self.add(node, (2,6), "string literal .format()")
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187 self.default(node)
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188 def visitIfExp(self, node):
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189 self.add(node, (2,5), "inline if expression")
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190 self.default(node)
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191 def visitImport(self, node):
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192 for n in node.names:
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193 v = StandardModules.get(n[0])
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194 if v is not None:
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195 self.add(node, v, n[0])
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196 self.default(node)
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197 def visitName(self, node):
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198 v = Identifiers.get(node.name)
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199 if v is not None:
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200 self.add(node, v, node.name)
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201 self.default(node)
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202 def visitSet(self, node):
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203 self.add(node, (2,7), "set literal")
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204 self.default(node)
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205 def visitSetComp(self, node):
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206 self.add(node, (2,7), "set comprehension")
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207 self.default(node)
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208 def visitTryFinally(self, node):
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209 # try/finally with a suite generates a Stmt node as the body,
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210 # but try/except/finally generates a TryExcept as the body
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211 if isinstance(node.body, compiler.ast.TryExcept):
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212 self.add(node, (2,5), "try/except/finally")
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213 self.default(node)
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214 def visitWith(self, node):
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215 if isinstance(node.body, compiler.ast.With):
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216 self.add(node, (2,7), "with statement with multiple contexts")
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217 else:
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218 self.add(node, (2,5), "with statement")
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219 self.default(node)
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220 def visitYield(self, node):
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221 self.add(node, (2,2), "yield expression")
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222 self.default(node)
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223
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224 def get_versions(source):
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225 """Return information about the Python versions required for specific features.
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226
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227 The return value is a dictionary with keys as a version number as a tuple
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228 (for example Python 2.6 is (2,6)) and the value are a list of features that
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229 require the indicated Python version.
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230 """
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231 tree = compiler.parse(source)
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232 checker = compiler.walk(tree, NodeChecker())
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233 return checker.vers
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234
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235 def v27(source):
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236 if sys.version_info >= (2, 7):
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237 return qver(source)
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238 else:
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239 print >>sys.stderr, "Not all features tested, run --test with Python 2.7"
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240 return (2, 7)
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241
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242 def qver(source):
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243 """Return the minimum Python version required to run a particular bit of code.
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244
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245 >>> qver('print "hello world"')
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246 (2, 0)
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247 >>> qver('class test(object): pass')
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248 (2, 2)
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249 >>> qver('yield 1')
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250 (2, 2)
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251 >>> qver('a // b')
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252 (2, 2)
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253 >>> qver('True')
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254 (2, 2)
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255 >>> qver('enumerate(a)')
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256 (2, 3)
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257 >>> qver('total = sum')
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258 (2, 0)
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259 >>> qver('sum(a)')
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260 (2, 3)
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261 >>> qver('(x*x for x in range(5))')
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262 (2, 4)
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263 >>> qver('class C:\\n @classmethod\\n def m(): pass')
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264 (2, 4)
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265 >>> qver('y if x else z')
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266 (2, 5)
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267 >>> qver('import hashlib')
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268 (2, 5)
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269 >>> qver('from hashlib import md5')
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270 (2, 5)
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271 >>> qver('import xml.etree.ElementTree')
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272 (2, 5)
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273 >>> qver('try:\\n try: pass;\\n except: pass;\\nfinally: pass')
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274 (2, 0)
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275 >>> qver('try: pass;\\nexcept: pass;\\nfinally: pass')
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276 (2, 5)
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277 >>> qver('from __future__ import with_statement\\nwith x: pass')
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278 (2, 5)
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279 >>> qver('collections.defaultdict(list)')
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280 (2, 5)
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281 >>> qver('from collections import defaultdict')
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282 (2, 5)
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283 >>> qver('"{0}".format(0)')
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sanbi-uwc
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284 (2, 6)
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
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285 >>> qver('memoryview(x)')
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sanbi-uwc
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286 (2, 7)
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
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287 >>> v27('{1, 2, 3}')
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sanbi-uwc
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288 (2, 7)
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
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289 >>> v27('{x for x in s}')
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
sanbi-uwc
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290 (2, 7)
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
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291 >>> v27('{x: y for x in s}')
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
sanbi-uwc
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292 (2, 7)
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
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293 >>> qver('from __future__ import with_statement\\nwith x:\\n with y: pass')
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
sanbi-uwc
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294 (2, 5)
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295 >>> v27('from __future__ import with_statement\\nwith x, y: pass')
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
sanbi-uwc
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296 (2, 7)
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297 >>> qver('@decorator\\ndef f(): pass')
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sanbi-uwc
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298 (2, 4)
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299 >>> qver('@decorator\\nclass test:\\n pass')
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300 (2, 6)
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301
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302 #>>> qver('0o0')
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303 #(2, 6)
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304 #>>> qver('@foo\\nclass C: pass')
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305 #(2, 6)
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306 """
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307 return max(get_versions(source).keys())
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308
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309 Verbose = False
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310 MinVersion = (2, 3)
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311 Lint = False
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312
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313 files = []
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314 i = 1
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315 while i < len(sys.argv):
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
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316 a = sys.argv[i]
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317 if a == "--test":
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318 import doctest
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319 doctest.testmod()
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320 sys.exit(0)
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321 if a == "-v" or a == "--verbose":
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322 Verbose = True
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
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323 elif a == "-l" or a == "--lint":
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
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324 Lint = True
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325 elif a == "-m" or a == "--min-version":
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
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326 i += 1
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327 MinVersion = tuple(map(int, sys.argv[i].split(".")))
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
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328 else:
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329 files.append(a)
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
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330 i += 1
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331
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332 if not files:
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333 print >>sys.stderr, """Usage: %s [options] source ...
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
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334
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335 Report minimum Python version required to run given source files.
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336
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337 -m x.y or --min-version x.y (default 2.3)
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338 report version triggers at or above version x.y in verbose mode
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339 -v or --verbose
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340 print more detailed report of version triggers for each version
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341 """ % sys.argv[0]
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342 sys.exit(1)
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343
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344 for fn in files:
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345 try:
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346 f = open(fn)
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347 source = f.read()
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348 f.close()
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349 ver = get_versions(source)
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350 if Verbose:
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351 print fn
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352 for v in sorted([k for k in ver.keys() if k >= MinVersion], reverse=True):
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353 reasons = [x for x in uniq(ver[v]) if x]
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354 if reasons:
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355 # each reason is (lineno, message)
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356 print "\t%s\t%s" % (".".join(map(str, v)), ", ".join([x[1] for x in reasons]))
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357 elif Lint:
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
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358 for v in sorted([k for k in ver.keys() if k >= MinVersion], reverse=True):
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
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359 reasons = [x for x in uniq(ver[v]) if x]
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
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360 for r in reasons:
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361 # each reason is (lineno, message)
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362 print "%s:%s: %s %s" % (fn, r[0], ".".join(map(str, v)), r[1])
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
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363 else:
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364 print "%s\t%s" % (".".join(map(str, max(ver.keys()))), fn)
a0c85f2d74a5 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit 9612f06b8c60520dc0a047ec072ced317c7796e4
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365 except SyntaxError, x:
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366 print "%s: syntax error compiling with Python %s: %s" % (fn, platform.python_version(), x)