Mercurial > repos > sanbi-uwc > vcf_snps_utils

diff intersect.xml @ 4:9c39be76e559 draft

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planemo upload for repository https://github.com/COMBAT-TB/vcf_snps_utils commit a277f88f2a997acde30a91fc0ad52cf96b697e22
author sanbi-uwc
date Thu, 16 Aug 2018 09:13:40 -0400
parents ec601f9af09b
children 796bf12181f6
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line diff
--- a/intersect.xml	Thu Aug 16 08:51:43 2018 -0400
+++ b/intersect.xml	Thu Aug 16 09:13:40 2018 -0400
@@ -35,15 +35,15 @@
 
   <help>
 
-**What it does**
+  **What it does**
 
-Intersect SNPs and generate an output report from a CSV file of knowned SNPs (workflow generated/annotated)
+  Intersect SNPs and generate an output report from a CSV file of knowned SNPs (workflow generated/annotated)
 
-Usage: vcf_snps_utils intersect [OPTIONS] [VCFFILES]... CSVFILE
+  Usage: vcf_snps_utils intersect [OPTIONS] [VCFFILES]... CSVFILE
 
------
+  -----
 
-**Example**
+  **Example**
 
   VCF snp intersect tool (CSV file).
 
@@ -61,10 +61,10 @@
   <http://www.combattb.org/software/tools/> General help using CombatTB
   software: <http://www.combattb.org/gethelp/>
 
-Options:
-  --out TEXT  set the output directory, default is
+  Options:
+    --out TEXT  set the output directory, default is
               "/tmp/vcf_snps_utils_output/"
-  --help      Show this message and exit.
+    --help      Show this message and exit.
 
   vcf_snps_utils intersect example.vcf example.csv --out output/test