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changeset 1:bbe75c52b300 draft

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planemo upload for repository https://github.com/SANBI-SA/galaxy-tools/tree/master/tools/trimmomatic commit 0c8f6d302eafe1ee9fb8a2adac3fe37a8082628d
author sanbi-uwc
date Fri, 20 Jan 2017 08:57:21 -0500
parents d8975856862e
children 5c5a2a7e9cbb
files trimmomatic.xml
diffstat 1 files changed, 2 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/trimmomatic.xml	Fri Jan 20 08:00:23 2017 -0500
+++ b/trimmomatic.xml	Fri Jan 20 08:57:21 2017 -0500
@@ -1,12 +1,9 @@
-<tool id="trimmomatic" name="Trimmomatic" version="0.36.1">
+<tool id="trimmomatic" name="Trimmomatic" version="0.36.2">
   <description>flexible read trimming tool for Illumina NGS data</description>
   <requirements>
     <requirement type="package" version="0.36">trimmomatic</requirement>
   </requirements>
-  <stdio>
-    <exit_code range="1:" />
-  </stdio>
-  <command><![CDATA[
+  <command detect_errors="aggressive"><![CDATA[
   #if $paired_end.is_paired_end
     #set $paired_input_type = $paired_end.paired_input_type_conditional.paired_input_type
     #if $paired_input_type == "pair_of_files"