Mercurial > repos > sanbi-uwc > trimmomatic
view install_tool_deps.sh @ 1:bbe75c52b300 draft
planemo upload for repository https://github.com/SANBI-SA/galaxy-tools/tree/master/tools/trimmomatic commit 0c8f6d302eafe1ee9fb8a2adac3fe37a8082628d
author | sanbi-uwc |
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date | Fri, 20 Jan 2017 08:57:21 -0500 |
parents | d8975856862e |
children |
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#!/bin/bash # # Install dependencies for Trimmomatic for testing from the command line # # Installer functions . $(dirname $0)/../../local_dependency_installers/trimmomatic.sh # Installation directory TOP_DIR=$1 if [ -z "$TOP_DIR" ] ; then echo Usage: $(basename $0) DIR exit fi if [ -z "$(echo $TOP_DIR | grep ^/)" ] ; then TOP_DIR=$(pwd)/$TOP_DIR fi if [ ! -d "$TOP_DIR" ] ; then mkdir -p $TOP_DIR fi # Trimmomatic 0.32 install_trimmomatic_0_36 $TOP_DIR ## #