Mercurial > repos > sanbi-uwc > trimmomatic

diff install_tool_deps.sh @ 0:d8975856862e draft

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planemo upload for repository https://github.com/SANBI-SA/galaxy-tools/tree/master/tools/trimmomatic commit 59bf1dad1e71026bff0431a020335c51ce1fd153
author sanbi-uwc
date Fri, 20 Jan 2017 08:00:23 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/install_tool_deps.sh	Fri Jan 20 08:00:23 2017 -0500
@@ -0,0 +1,22 @@
+#!/bin/bash
+#
+# Install dependencies for Trimmomatic for testing from the command line
+#
+# Installer functions
+. $(dirname $0)/../../local_dependency_installers/trimmomatic.sh
+# Installation directory
+TOP_DIR=$1
+if [ -z "$TOP_DIR" ] ; then
+    echo Usage: $(basename $0) DIR
+    exit
+fi
+if [ -z "$(echo $TOP_DIR | grep ^/)" ] ; then
+    TOP_DIR=$(pwd)/$TOP_DIR
+fi
+if [ ! -d "$TOP_DIR" ] ; then
+    mkdir -p $TOP_DIR
+fi
+# Trimmomatic 0.32
+install_trimmomatic_0_36 $TOP_DIR
+##
+#