Mercurial > repos > sanbi-uwc > trimmomatic
comparison install_tool_deps.sh @ 0:d8975856862e draft
planemo upload for repository https://github.com/SANBI-SA/galaxy-tools/tree/master/tools/trimmomatic commit 59bf1dad1e71026bff0431a020335c51ce1fd153
| author | sanbi-uwc |
|---|---|
| date | Fri, 20 Jan 2017 08:00:23 -0500 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:d8975856862e |
|---|---|
| 1 #!/bin/bash | |
| 2 # | |
| 3 # Install dependencies for Trimmomatic for testing from the command line | |
| 4 # | |
| 5 # Installer functions | |
| 6 . $(dirname $0)/../../local_dependency_installers/trimmomatic.sh | |
| 7 # Installation directory | |
| 8 TOP_DIR=$1 | |
| 9 if [ -z "$TOP_DIR" ] ; then | |
| 10 echo Usage: $(basename $0) DIR | |
| 11 exit | |
| 12 fi | |
| 13 if [ -z "$(echo $TOP_DIR | grep ^/)" ] ; then | |
| 14 TOP_DIR=$(pwd)/$TOP_DIR | |
| 15 fi | |
| 16 if [ ! -d "$TOP_DIR" ] ; then | |
| 17 mkdir -p $TOP_DIR | |
| 18 fi | |
| 19 # Trimmomatic 0.32 | |
| 20 install_trimmomatic_0_36 $TOP_DIR | |
| 21 ## | |
| 22 # |