Mercurial > repos > sanbi-uwc > shapeit_phase
changeset 18:d3515c2a3f51 draft
planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry commit 40d1319d78fae41b53fe3511db41ee5479c58db8-dirty
| author | sanbi-uwc |
|---|---|
| date | Tue, 18 Sep 2018 09:49:26 -0400 |
| parents | 1f460ad509b6 |
| children | 42bafd3c5a83 |
| files | shapeit_phase.xml |
| diffstat | 1 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/shapeit_phase.xml Tue Sep 18 08:55:42 2018 -0400 +++ b/shapeit_phase.xml Tue Sep 18 09:49:26 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="shapeit_phase" name="shapeit_phase" version="0.16.0"> +<tool id="shapeit_phase" name="shapeit_phase" version="0.17.0"> <description>genomic data with or without reference panel</description> <requirements> <requirement type="package" version="2.r837">shapeit</requirement> @@ -182,10 +182,10 @@ --output-log $out_log #else --output-log output - | grep -v 'ERROR: Reference and Main panels are not well aligned:' - ; mv output.mendel.log $out_log - && mv output.mendel.snp.strand $out_strand - && mv output.mendel.snp.strand.exclude $out_exclude + | grep -v 'ERROR:.* Reference and Main panels are not well aligned:' + ; mv output.log $out_log + && mv output.snp.strand $out_strand + && mv output.snp.strand.exclude $out_exclude #end if # NOTE that in check mode we are ignoring the error related to panel misalignment ]]></command>