Mercurial > repos > sanbi-uwc > shapeit_phase

annotate tool-data/shapeit2_ref.loc.sample @ 18:d3515c2a3f51 draft

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planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry commit 40d1319d78fae41b53fe3511db41ee5479c58db8-dirty
author sanbi-uwc
date Tue, 18 Sep 2018 09:49:26 -0400
parents ce32a30e0594
children
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ce32a30e0594 planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry commit 72b6cb6029a3979b51e796a8c210fcf903cf7b23
sanbi-uwc
parents:
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1 #This file lists the locations of SHAPEIT reference data connections
ce32a30e0594 planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry commit 72b6cb6029a3979b51e796a8c210fcf903cf7b23
sanbi-uwc
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2 #
ce32a30e0594 planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry commit 72b6cb6029a3979b51e796a8c210fcf903cf7b23
sanbi-uwc
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3 #<value> <name> <path> <reference_file_prefix> <map_file_prefix> <sample_file_prefix>
ce32a30e0594 planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry commit 72b6cb6029a3979b51e796a8c210fcf903cf7b23
sanbi-uwc
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4 #
ce32a30e0594 planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry commit 72b6cb6029a3979b51e796a8c210fcf903cf7b23
sanbi-uwc
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5 #For example
ce32a30e0594 planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry commit 72b6cb6029a3979b51e796a8c210fcf903cf7b23
sanbi-uwc
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6 #
ce32a30e0594 planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry commit 72b6cb6029a3979b51e796a8c210fcf903cf7b23
sanbi-uwc
parents:
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7 #1000G_Phase3 1000 Genomes project haplotypes /path/to/shapeit_ref/1000G 1000GP_Phase3_chr genetic_map_chr 1000GP_Phase3