Mercurial > repos > sanbi-uwc > shapeit_phase

annotate tool-data/shapeit_ref.loc.sample @ 5:ceb05c9e6d0a draft

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planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry commit 919e9937cdb568591f89a412e22a1124bbb56f77-dirty
author sanbi-uwc
date Mon, 17 Sep 2018 06:06:18 -0400
parents 4eccc085e9fe
children
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4eccc085e9fe planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry commit 6dfd47f8de029246dd63d60f24ed685a13f8a2ff
sanbi-uwc
parents:
diff changeset
1 #This file lists the locations of SHAPEIT reference data connections
4eccc085e9fe planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry commit 6dfd47f8de029246dd63d60f24ed685a13f8a2ff
sanbi-uwc
parents:
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2 #
5
ceb05c9e6d0a planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry commit 919e9937cdb568591f89a412e22a1124bbb56f77-dirty
sanbi-uwc
parents: 2
diff changeset
3 #<value> <description> <path> <reference_file_prefix> <map_file_prefix> <sample_file_prefix>
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4eccc085e9fe planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry commit 6dfd47f8de029246dd63d60f24ed685a13f8a2ff
sanbi-uwc
parents:
diff changeset
4 #
4eccc085e9fe planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry commit 6dfd47f8de029246dd63d60f24ed685a13f8a2ff
sanbi-uwc
parents:
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5 #For example
4eccc085e9fe planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry commit 6dfd47f8de029246dd63d60f24ed685a13f8a2ff
sanbi-uwc
parents:
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6 #
5
ceb05c9e6d0a planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry commit 919e9937cdb568591f89a412e22a1124bbb56f77-dirty
sanbi-uwc
parents: 2
diff changeset
7 #1000G_Phase3 1000 Genomes project haplotypes /path/to/shapeit_ref/1000G 1000GP_Phase3_chr genetic_map_chr 1000GP_Phase3