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annotate reduce_by_merge.xml @ 0:4599e6256e81 draft

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planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit bea01cf35a3cecf25b2c64197736297d88f05fe6
author sanbi-uwc
date Mon, 16 Jan 2017 08:47:24 -0500
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children 8d6874efe309
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4599e6256e81 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit bea01cf35a3cecf25b2c64197736297d88f05fe6
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1 <?xml version="1.0" encoding="utf-8" ?>
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2 <tool id="reduce_by_merge" name="Reduce by Merge" version="0.0.1">
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3 <description>Concatenate a collection of FASTA datasets into a single FASTA dataset</description>
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sanbi-uwc
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4 <command detect_errors="aggressive"><![CDATA[
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5 cat
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6 #for $input in $input_datasets
4599e6256e81 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit bea01cf35a3cecf25b2c64197736297d88f05fe6
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7 '${input}'
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8 #end for
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9 > '${output}'
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10 ]]>
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11 </command>
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12 <inputs>
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13 <param name="input_datasets" format="fasta" type="data_collection" collection_type="list" label="Input collection of datasets" />
4599e6256e81 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit bea01cf35a3cecf25b2c64197736297d88f05fe6
sanbi-uwc
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14 </inputs>
4599e6256e81 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit bea01cf35a3cecf25b2c64197736297d88f05fe6
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15 <outputs>
4599e6256e81 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit bea01cf35a3cecf25b2c64197736297d88f05fe6
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16 <data name="output" label="Merge ${on_string}" format="fasta"/>
4599e6256e81 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit bea01cf35a3cecf25b2c64197736297d88f05fe6
sanbi-uwc
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17 </outputs>
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sanbi-uwc
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18 <tests>
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19 <test>
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20 <param name="input_datasets">
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21 <collection type="list">
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22 <element name="input_datasets.input1" value="input1.fasta" />
4599e6256e81 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit bea01cf35a3cecf25b2c64197736297d88f05fe6
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23 <element name="input_datasets.input2" value="input2.fasta" />
4599e6256e81 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit bea01cf35a3cecf25b2c64197736297d88f05fe6
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24 <element name="input_datasets.input3" value="input3.fasta" />
4599e6256e81 planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit bea01cf35a3cecf25b2c64197736297d88f05fe6
sanbi-uwc
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25 </collection>
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26 </param>
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27 <output name="output" value="output1.fasta" />
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28 </test>
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29 </tests>
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30 <help><![CDATA[
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31 Merge all elements of the input collection into a single output dataset by concatenating them together.
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32 ]]>
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33 </help>
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34 <citations>
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35 </citations>
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36 </tool>