Mercurial > repos > sanbi-uwc > qc

changeset 2:4c28aa81d537 draft

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"planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc/tree/master/tools/qc commit eb031925000ec0f67038d22784c607472b389d15"
author sanbi-uwc
date Thu, 01 Apr 2021 07:24:37 +0000
parents 890892b60579
children 590a86161406
files qc.xml
diffstat 1 files changed, 6 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/qc.xml	Wed Mar 31 09:34:27 2021 +0000
+++ b/qc.xml	Thu Apr 01 07:24:37 2021 +0000
@@ -6,8 +6,12 @@
         <requirement type="package" version="3.3.4">matplotlib</requirement>
     </requirements>
     <command detect_errors="exit_code" interpreter="python"><![CDATA[
-        qc.py '$qc_type_conditional.qc_type' --outfile '$output1' --sample '$input_sample'\
-            --ref '$input_ref' --bam '$input_bam' --fasta '$input_cons_fasta' && \
+        qc.py '$qc_type_conditional.qc_type' 
+            --outfile '$output1' 
+            --sample '$input_sample'
+            --ref '$input_ref' 
+            --bam '$input_bam' 
+            --fasta '$input_cons_fasta' && 
         mv '$input_sample'.depth.png '$output2'
     ]]></command>
     <inputs>