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planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry/galaxy-tools/plink commit 5bc9005790b78aabb615f559f31ee71c714c7072
author sanbi-uwc
date Wed, 12 Sep 2018 05:23:00 -0400
parents 0a66d41464b4
children
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PLINK v1.90b3q 64-bit (29 May 2015)
Options in effect:
  --bfile ACB_example
  --chr 6
  --make-bed
  --out per_chrom/ACB_example_chr6

Hostname: MGH001803.local
Working directory: /Users/alicia/Dropbox/Shared/anc_sandbox
Start time: Sun Oct  4 10:47:54 2015

Random number seed: 1443970074
16384 MB RAM detected; reserving 8192 MB for main workspace.
47613 variants loaded from .bim file.
489 people (251 males, 238 females) loaded from .fam.
Using 1 thread (no multithreaded calculations invoked).
Before main variant filters, 343 founders and 146 nonfounders present.
Calculating allele frequencies... done.
Total genotyping rate is 0.995496.
47613 variants and 489 people pass filters and QC.
Note: No phenotypes present.
--make-bed to per_chrom/ACB_example_chr6.bed + per_chrom/ACB_example_chr6.bim +
per_chrom/ACB_example_chr6.fam ... done.

End time: Sun Oct  4 10:47:54 2015