Mercurial > repos > sanbi-uwc > plink

view test-data/test1.log @ 2:51f95fbef112 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry/galaxy-tools/plink commit c72e05aafb59b32b964f3c4ae15a051cd17bd9ee
author sanbi-uwc
date Mon, 27 Aug 2018 09:35:06 -0400
parents 0a66d41464b4
children
line wrap: on
line source

PLINK v1.90b3q 64-bit (29 May 2015)
Options in effect:
  --bfile ACB_example
  --chr 6
  --make-bed
  --out per_chrom/ACB_example_chr6

Hostname: MGH001803.local
Working directory: /Users/alicia/Dropbox/Shared/anc_sandbox
Start time: Sun Oct  4 10:47:54 2015

Random number seed: 1443970074
16384 MB RAM detected; reserving 8192 MB for main workspace.
47613 variants loaded from .bim file.
489 people (251 males, 238 females) loaded from .fam.
Using 1 thread (no multithreaded calculations invoked).
Before main variant filters, 343 founders and 146 nonfounders present.
Calculating allele frequencies... done.
Total genotyping rate is 0.995496.
47613 variants and 489 people pass filters and QC.
Note: No phenotypes present.
--make-bed to per_chrom/ACB_example_chr6.bed + per_chrom/ACB_example_chr6.bim +
per_chrom/ACB_example_chr6.fam ... done.

End time: Sun Oct  4 10:47:54 2015