Mercurial > repos > sanbi-uwc > plink
diff test-data/test1.log @ 0:0a66d41464b4 draft
planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry/galaxy-tools/plink commit d75648a99156867f43b45dc4cdb6fdb12bfc5de4
| author | sanbi-uwc |
|---|---|
| date | Mon, 27 Aug 2018 09:21:46 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test1.log Mon Aug 27 09:21:46 2018 -0400 @@ -0,0 +1,25 @@ +PLINK v1.90b3q 64-bit (29 May 2015) +Options in effect: + --bfile ACB_example + --chr 6 + --make-bed + --out per_chrom/ACB_example_chr6 + +Hostname: MGH001803.local +Working directory: /Users/alicia/Dropbox/Shared/anc_sandbox +Start time: Sun Oct 4 10:47:54 2015 + +Random number seed: 1443970074 +16384 MB RAM detected; reserving 8192 MB for main workspace. +47613 variants loaded from .bim file. +489 people (251 males, 238 females) loaded from .fam. +Using 1 thread (no multithreaded calculations invoked). +Before main variant filters, 343 founders and 146 nonfounders present. +Calculating allele frequencies... done. +Total genotyping rate is 0.995496. +47613 variants and 489 people pass filters and QC. +Note: No phenotypes present. +--make-bed to per_chrom/ACB_example_chr6.bed + per_chrom/ACB_example_chr6.bim + +per_chrom/ACB_example_chr6.fam ... done. + +End time: Sun Oct 4 10:47:54 2015