Mercurial > repos > sanbi-uwc > package_qualimap_2_2

annotate tool_dependencies.xml @ 0:42a1055b3b11 draft

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planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
author sanbi-uwc
date Tue, 29 Mar 2016 10:20:11 -0400
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children 21698ad1bfb1
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42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
sanbi-uwc
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diff changeset
1 <?xml version="1.0"?>
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
sanbi-uwc
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2 <tool_dependency>
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
sanbi-uwc
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3 <package name="qualimap" version="2.2">
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
sanbi-uwc
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4 <install version="2.2">
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
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5 <actions_group>
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
sanbi-uwc
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6 <actions>
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
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7 <action type="download_by_url">https://depot.galaxyproject.org/software/qualimap/qualimap_2.2_src_all.zip</action>
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
sanbi-uwc
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8 <action type="move_directory_files">
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
sanbi-uwc
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9 <source_directory>.</source_directory>
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
sanbi-uwc
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10 <destination_directory>$INSTALL_DIR</destination_directory>
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
sanbi-uwc
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11 </action>
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
sanbi-uwc
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12 </actions>
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
sanbi-uwc
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13 <action type="set_environment">
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
sanbi-uwc
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14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
sanbi-uwc
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15 </action>
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
sanbi-uwc
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16 </actions_group>
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
sanbi-uwc
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17 </install>
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
sanbi-uwc
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18 <readme>
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
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19 <![CDATA[
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
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20 Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI)
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
sanbi-uwc
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21 and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
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22
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
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23 Supported types of experiments include:
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
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24 Whole-genome sequencing
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
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25 Whole-exome sequencing
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
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26 RNA-seq (speical mode available)
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
sanbi-uwc
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27 ChIP-seq
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
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28 http://qualimap.bioinfo.cipf.es
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
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29 ]]>
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
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30 </readme>
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
sanbi-uwc
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31 </package>
42a1055b3b11 planemo upload for repository https://github.com/zipho/package_qualimap_2_2 commit dd3afb85598319e5a1a2a79febc792dc915764bc
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32 </tool_dependency>